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4 protocols using cleancap mcherry mrna

1

Plasmid DNA and mRNA Isolation Protocol

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Plasmid DNA encoding AmCyan fluorescent protein (pAmCyan1-C1) was purchased from Clontech Laboratories Inc., Mountain View, CA, USA. The plasmid was propagated in Subcloning Efficiency™ DH5α E. coli competent cells (Invitrogen, Thermo Fisher Scientific, Darmstadt, Germany), then isolated and purified using Qiagen EndoFree Plasmid Mega Kit (Qiagen, Hildesheim, Germany) as per manufacturer’s protocol. CleanCap® mCherry mRNA was purchased from Tri-Link BioTechnologies LLC, San Diego, CA, USA.
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2

CRISPR-Cas9 Cardiac Fibroblasts Editing

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Cardiac fibroblasts from ROSACas9-EGFP mice were transfected with guide RNAs using Lipofectamine MessengerMAX (Thermo Fisher) according to the manufacturer’s instructions. Briefly, 3 days postisolation, CD45−CD31−CD90 + cells were FACS sorted and replated at about 10,000 cells/cm2. After 6 days, when reaching 80–90% confluency, cells were incubated for 5 min with the RNA (1:50)–lipid (1:33) complex in Opti-MEM for 10 min at room temperature. Media was changed after 48 hr and cells were collected for RNA isolation at 72 hr. Two guide RNAs, designed and synthesized in-house (JAX Genetic Engineering Technologies facility), were used for each of the target genes (Figure 5—source data 1). CleanCap mCherry mRNA (TriLink Biotechnologies), and guide RNAs for GFP and scrambled guides were used as controls. Guide RNA for the GFP gene were same as in Li et al., 2014 (link).
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3

mRNA Transfection and Luminescence Assay

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CleanCap Fluc mRNA, CleanCap mCherry mRNA, and CleanCap Cyanine 5 Fluc mRNA were purchased from TriLink Biotechnologies. QUANT-iT Ribogreen reagent, LysoTracker Green, and Hoechst 33342 were purchased from ThermoFisher Scientific. One-Glo + Tox were purchased from Promega. HEK293T cells and HeLa cells were purchased from ATCC.
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4

cDNA Synthesis and Real-Time PCR

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0.5 μg of cytoplasmic RNA was spiked with 1 fmol of CleanCap® mCherry mRNA (Trilink L7023) and 0.5 μl of oligo(dT)15 primer (500 μg/ml) in a total volume of 10 μl. The mixture was incubated at 65°C for 5 min and immediately placed on ice. The mixture was brought to 20 μl with 4 μl of 25 mM MgCl2, 1 μl of 10 mM dNTPs, 4 μl of GoScript® 5× Reaction Buffer and 1 μl of GoScript® Reverse Transcriptase (Promega A2791). Reactions were placed in the thermocycler at 25°C for 5 min, 42°C for 1 h and 70°C for 15 min. The resulting cDNA was quantified by real time PCR in technical triplicate reactions containing 0.5 μM reverse and forward primer (Supplementary Table S4) and 1× SensiFAST SYBR No-ROX (Bioline, BIO-98005) with a Bio-Rad CFX Connect real-time PCR detection system. PCR was performed with the protocol of 95°C for 3 min, 40 cycles of (95°C for 10 s, 55°C for 30 s).
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