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Prism software version 4

Manufactured by GraphPad
Sourced in United States

Prism Software version 4.0 is a data analysis and graphing software developed by GraphPad. It provides tools for scientists to organize, analyze, and present their research data.

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12 protocols using prism software version 4

1

Lifespan Assay of C. elegans Under Bacterial Stress

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Experimental procedures and data analysis were performed as previously described (33 (link), 125 (link)). C. elegans wild-type Bristol strain N2 worms were grown at 22°C on nematode growth medium (NGM) agar plates using E. coli OP50 as the nutrient. Untreated or treated bacteria (109 CFU mL−1) were spread onto NGM solidified agar plates before incubation at 37°C overnight. The plates were cooled to room temperature for 4 h, and 20 to 30 L4-synchronized worms were plated and incubated at 22°C in a humid environment to prevent plate drying. Worm survival was scored daily for 32 days using an Axiovert S100 optical microscope (Zeiss, Oberkochen, Germany) equipped with a digital camera (DXM 1200F; Nikon Instruments, Melville, NY). Four independent experiments per condition were performed, and all worms from each condition were used for the survival assay. The Kaplan-Meier method was used to calculate the nematode survival, and the significance of survival differences was tested using a log-rank test (Prism software, version 4.0; GraphPad Software, San Diego, CA). As a control to ascertain similar growth on NGM plates between treated and untreated bacteria, the NGM agar plates were entirely scraped every 5 days for enumeration on LB agar plates.
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2

Validating Continuous Glucose Monitoring during Exercise

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Based on findings of a pilot-study, we made a sample size estimation for the correlation between both measurements (blood glucose and interstitial glucose during exercise) which gave a number of seven patients (correlation of r = 0.91 with a power of 0.95).
Distribution was tested via D’Agostino and Pearson omnibus normality tests. Descriptive statistics is given as mean ± standard deviation (SD). Comparison of means from CGM vs. BG was performed with paired t-tests, The Bland-Altman method (bias and 95% limits of agreement) and Pearson correlation. The CGM accuracy in CON vs. HIIE was compared with paired t-test of mean difference (MD) and mean absolute relative differences (MARD) of CGM and BG between exercise conditions per patient (CON L vs. HIIE L, CON M vs. HIIE M and CON H vs. HIIE H). Individual paired interstitial glucose and reference BG values are given using the Clarke Error Grid analysis [30 (link)]. Five zones characterize errors of varying levels of clinical significance, among which values in zones A and B are defined as “clinically acceptable”, whereas values in zones C, D, or E are considered potentially unsafe and could lead to clinically significant errors. Statistical analyses were performed with Microsoft Excel (Microsoft Corporation 2007, Washington, DC, USA) and standard software package Prism Software version 4.0 (GraphPad, La Jolla, CA, USA).
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3

Statistical Analysis of Experimental Data

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Data are expressed as the mean±SEM. The statistical analysis of differences between two groups was assessed with the unpaired t-test, and the differences among more than three groups were assessed by ANOVA and multiple comparison tests with Prism Software version 4.0 (GraphPad Software, San Diego California USA). P values <0.05 were considered to be statistically significant.
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4

Lifespan Assay of C. elegans Under Bacterial Stress

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Experimental procedures and data analysis were performed as previously described (33 (link), 125 (link)). C. elegans wild-type Bristol strain N2 worms were grown at 22°C on nematode growth medium (NGM) agar plates using E. coli OP50 as the nutrient. Untreated or treated bacteria (109 CFU mL−1) were spread onto NGM solidified agar plates before incubation at 37°C overnight. The plates were cooled to room temperature for 4 h, and 20 to 30 L4-synchronized worms were plated and incubated at 22°C in a humid environment to prevent plate drying. Worm survival was scored daily for 32 days using an Axiovert S100 optical microscope (Zeiss, Oberkochen, Germany) equipped with a digital camera (DXM 1200F; Nikon Instruments, Melville, NY). Four independent experiments per condition were performed, and all worms from each condition were used for the survival assay. The Kaplan-Meier method was used to calculate the nematode survival, and the significance of survival differences was tested using a log-rank test (Prism software, version 4.0; GraphPad Software, San Diego, CA). As a control to ascertain similar growth on NGM plates between treated and untreated bacteria, the NGM agar plates were entirely scraped every 5 days for enumeration on LB agar plates.
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5

Glycemic Control in Diabetes during HIIE

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A repeated-measures ANOVA design (number of repetitions = 4) was calculated a priori with a medium effect size of 0.5 and an alpha-error of 0.05 based on pilot data. Correlations between repetitions were assumed to equal 0.5. With a sample size of 6 patients, the achieved power (beta-1) is greater than 0.95 and is therefore appropriate for a high risk study. In case of a dropout we decided to conduct our study with 7 subjects. All data were normally distributed (Shapiro-Wilk normality test). Descriptive statistics including mean and standard deviation (SD) was performed for participants’ anthropometric data, performance characteristics and diabetes-specific data. Relationships between variables were performed by a Pearson`s correlation coefficient analysis. For analysis of BG decrease and hormone response from baseline to the end of exercise and CGM post-exercise glucose levels over 24 h, an analysis of variance (ANOVA) for repeated measures with paired t-test was used. For the comparison of HIIE and CON for BG decrease, CGM values, carbohydrate utilization, and the response of hormones, blood lactate, RER, and heart rate, a paired t-test was applied. All statistics were performed with a standard software package Prism Software version 4.0 (GraphPad, USA).
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6

Cell Proliferation and Migration Assay

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Cells were plated at 1 × 104/well in a 96-well plate and allowed to adhere to the plate overnight. Cell proliferation was then determined using the 3-(4, 5-dimethylthiazolyl-2)-2,5-diphenyltetrazolium bromide (MTT) assay at different time points. Briefly, the culture medium was removed and 100 μl of RPMI-phenol free medium containing 10 μl of MTT stock solution, 5 mg/ml in phosphate-buffered saline (PBS) solution, were then added to each well. After 1 h incubation, the MTT solution was removed and 100 μl of DMSO were added to solubilize MTT-formazan crystals. Absorbance of the converted dye was measured at 570 nm using an iMark microplate reader (Biorad).
Cells were cultured in 24-well plate until confluence and then wounded using a 200 μl pipette tip in the middle of well. Three wounds were made for each sample, and migration distance was measured at time zero and after 24 and 48 h of stimulation with EGF (medium was replaced every day), under an Olympus IX-51 microscope. The percentage (%) of open wound area was determined and the change in open wound area (%) at 24 and 48 h against zero time was calculated using the GraphPad PRISM software version 4.0.
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7

Statistical Analysis of Experimental Data

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All data are expressed as the mean ± SEM of at least three separate experiments. The statistical significance between two experimental groups was indicated in the figures by asterisks, and comparisons were made using the Student’s t test. Calculated P-values less than or equal to 0.05 were considered to be of statistical significance. Data were analyzed with the PRISM software version 4 (GraphPad Software, CA, US).
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8

Quantifying Fibronectin and Cell Viability

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Graph Pad PRISM software (version 4) was used to perform data analysis. Fibronectin concentration was analysed using Kruskal-Wallis with Dunn’s post analysis for multiple comparisons. MTT assay and direct cell count with Trypan blue exclusion assay results were presented as mean ± SD and assessed using Analysis of variance with Bonferroni’s correction for multiple comparisons. P value < 0.05 compared with the control were considered as statistically significant.
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9

Statistical Analysis of WT vs. OA Transgenic Groups

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The statistical differences between WT and OA transgenic groups for the in vivo and in vitro data were determined using unpaired, two-tailed Student’s t-tests. One-way analysis of variance (ANOVA) with Bonferroni post-hoc tests were used for multiple comparisons and adjusted p-values are reported. All statistical analyses were generated using GraphPad Prism Software version 4 (San Diego, CA). The differences were considered statistically significant if the p-value < 0.05. All data are represented as mean plus standard error of the mean (SEM). All in vitro data are representative of at least three independent experiments.
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10

Statistical Analysis of Experimental Data

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All statistical analyses were performed using the Graph-Pad-Prism Software Version 4. Student’s t test with Welch’s correction was performed for data analysis. P < 0.05 was considered as significant difference between groups.
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