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19 protocols using rip lysis buffer

1

RNA-Binding Protein Immunoprecipitation Assay

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Using a Magna RIP™ RNA Binding Protein Immunoprecipitation Kit (Millipore, Bedford, MA, USA), RIP assay was carried out. After being harvested, transfected 5-8F or CNE-1 cells were lysed in RIP lysis buffer (Solarbio, Beijing, China). Subsequently, magnetic beads (Invitrogen) were added to the RIP lysis buffer (Solarbio) and then conjugated overnight with anti-Ago2 (Abcam) or anti-IgG (Abcam) at 4 °C. The immunoprecipitated RNA was acquired after digestion with proteinase K (Absin, Shanghai, China) and quantified by RT-qPCR.
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2

Ago2 RIP Assay for RNA Binding

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An RIP assay was performed using a Magna RIP™ RNA Binding Protein Immunoprecipitation Kit (Millipore, Bedford, MA, USA) [6 (link)]. After the transfected MCF7 and MDA-MB-453 cells were harvested, the cells were lysed using RIP lysis buffer (Solarbio, Beijing, China). Next, we added magnetic beads (Invitrogen) to RIP lysis buffer (Solarbio) and then conjugated the beads with anti-Ago2 (Abcam) or anti-IgG (Abcam) (overnight, 4°C). After digestion with proteinase K (Absin, Shanghai, China) the immunoprecipitated RNA was acquired and then quantified by RT-PCR.
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3

Ago2-RIP for RNA Profiling

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The Imprint RNA Immunoprecipitation Kit (Millipore, Bedford, OH, USA) was applied for RIP assay. Briefly, cell extracts were harvested after lysing in RIP lysis buffer (Solarbio, Beijing, China) and incubated with magnetic beads (Invitrogen) conjugated to antibodies of anti-Ago2 (Millipore) and anti-IgG (Millipore). RNA precipitates were extracted for qRT-PCR.
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4

RNA Binding Protein Immunoprecipitation for miRNA

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Magna RIPTM RNA Binding Protein Immunoprecipitation Kit (Millipore) was utilized for conducting this assay. Simply put, cells were lysed via RIP lysis buffer (Solarbio) and then the obtained lysates were cultivated for a whole night in RIP buffer with magnetic beads coating anti-Ago2 (Millipore) or anti-IgG. After that, the precipitated RNAs was isolated and analyzed through RT-qPCR. Bio-repeats were run in triplicate.
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5

RNA Immunoprecipitation Assay for Ago2 Binding

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RIP assay was performed using the Magna RIPTM RNA Binding Protein Immunoprecipitation Kit (Millipore, Bedford, MA, USA) according to the manufacturer’s protocol. Briefly, cultured chondrocytes were collected and resuspended in RIP lysis buffer (Solarbio) then the cell extracts were incubated with RIP buffer containing magnetic beads conjugated with human anti-Ago2 antibody (Millipore) or mouse immunoglobulin G (IgG) control overnight at 4 °C. The next day, the magnetic beads were incubated with proteinase K after washing three times. Total RNAs was isolated from the extracts using the TRIzol reagent subsequently. Lastly, the relative enrichment of HOTAIR and miR-17-5p were determined by RT-qPCR analysis.
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6

Analyzing Ago2-Mediated RNA Interactions

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RIP was performed using a Magna RIPTM RNA kit (Millipore, USA). Briefly, cultured chondrocytes were suspended in RIP lysis buffer (Solarbio) and incubated in RIP buffer containing human anti-Ago2 antibody beads (Millipore) overnight (Input and normal IgG served as controls). Next, RNAs were extracted using TRIzol reagent to follow the relative enrichment of MEG3/FOXO1 and miR-361-5p.
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7

Ago2-Mediated RNA Immunoprecipitation

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RNA immunoprecipitation Assay analysis was performed using the Magna RIPTM RNA Binding Protein Immunoprecipitation Kit (Millipore, Bedford, Massachusetts). Simply, cultured HepG2.2.15, Huh7-1.3 cells were harvested and resuspended in RIP lysis buffer (Solarbio, Beijing, China), and then the cell extract was incubated with RIP buffer containing human anti-Ago2 antibody (Millipore) magnetic beads at 4°C overnight (Input and normal IgG was considered as controls). The next day, the magnetic beads were incubated with proteinase K after 3 washes. Total RNA was subsequently isolated from the extract using TRIzol reagent. Finally, the relative enrichment of SMAD7 and miRNA-21 was determined by RT-qPCR analysis.
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8

RNA Immunoprecipitation Workflow

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RNA immunoprecipitation (RIP) assay was performed by Imprint RNA immunoprecipitation kit (Sigma–Aldrich) according to manufacturer’s instructions. Briefly, IgG-induced Hela cells were collected and resuspended in RIP lysis buffer (Solarbio), subsequently centrifuged at 12000×g for 5 min. Then, cell lysate was incubated with anti-Argonaute2 (anti-Ago2) or anti-IgG (NC) overnight at 4°C, followed by the addition of Protein A magnetic beads to get the immunoprecipitation complex. At last, the relative enrichment of RP11-284F21.9 and miR-769-3p were detected by RT-qPCR.
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9

Ago2-immunoprecipitation for RNA analysis

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RIP lysis buffer (Solarbio) was used to lyse chondrocytes. Then, lysate was incubated with RIP buffer plus magnetic beads conjugated to human anti-Ago2 antibody (Millipore), followed by proteinase K. Finally, qRT-PCR was used to examine enriched RNA levels.
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10

RNA Immunoprecipitation of Argonaute2

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RNA immunoprecipitation assay was performed by Imprint RNA immunoprecipitation kit (Sigma-Aldrich) referring to the recommended protocols of manufacturer. Firstly, IL-1β-induced chondrocytes were collected and resuspended in RIP lysis buffer (Solarbio), subsequently centrifuged at 12,000g for 5 min. Then, cell lysate was incubated with anti-Argonaute2 (anti-Ago2) or anti-IgG (negative control) overnight at 4 °C, followed by the addition of Protein A magnetic beads to get the immunoprecipitation complex. Total RNA was isolated using GenElute™ Total RNA Purification Kit (Sigma-Aldrich). Lastly, the relative enrichment of MEG3 and miR-16 were determined by RT-qPCR analysis.
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