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4 protocols using progranulin

1

Protein Expression Analysis in Neurodegeneration

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The following antibodies were used for Western blot: Progranulin (R&D Systems #AF2420, 1:500 and MilliporeSigma #HPA008763, 1:500), NeuN (MilliporeSigma #MAB377, 1:500), GFAP (Agilent #Z033429, 1:500), LC3B (MilliporeSigma #L7543, 1:500), p62 (Proteintech #18420-1-AP, 1:1000), LAMP-1 (Santa Cruz Biotechnology #sc-20011, 1:1000), GM130 (Cell Signaling Technologies #12480, 1:1000), Grp94 (Santa Cruz Biotechnology #sc-32249, 1:500), Cytochrome C (Santa Cruz Biotechnology #sc-13156, 1:500), and Gapdh (MilliporeSigma #MAB374, 1:5000). Antibodies used for immunostaining included: Progranulin (R&D Systems #AF2420, 1:500), LAMP-2 (Invitrogen # PA1655, 1:500), GFP (Cell Signaling Technologies #2956, 1:500), Cathepsin D (R&D Systems #AF1029, 1:500), NeuN (MilliporeSigma #MAB377, 1:500), GFAP (Agilent #Z033429, 1:1000), and MAP2 (Invitrogen # PA110005).
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2

Antibody Panel for Neurodegenerative Markers

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The following primary antibodies were used in this study: P2RY12 (Novus Biologicals, Centennial, CO, USA) catalog no. NBP2-33870; rabbit, 1:1000–1:2000 used for immunohistochemistry (IHC) and western blot (WB). P2RY12 (Alomone Labs, Tel Aviv, Israel); catalog no. APR-012; rabbit, 1:200 used for IHC. P2RY12 (Abcam, Cambridge, UK); catalog no. AB83066; rabbit, 1:2000 used for WB. HLA-DR clone LN3 (Abcam); catalog no. AB80658; mouse, 1:750 used for IHC. CD68 (Biolegend, San Diego, CA, USA); catalog no 916104; mouse, used at 1:250 for IHC. Progranulin (R&D Systems, Minneapolis, MN, USA; catalog no. AF2420, goat used at 1:100 for IHC. IBA-1 (Wako, Richmond, VA, USA); catalog no. 019-19741; rabbit, 1:1000 used for IHC. Aβ clone 6E10 (Biolegend); catalog no. 803001; mouse, 1:2000 used for IHC. pTau clone AT8 (ThermoFisher, Waltham, MA, USA); catalog no. MN1020: mouse, 1:3000 used for IHC.
Secondary biotinylated-antibodies used for enzyme histochemistry and Avidin-Biotin-Complex (ABC) peroxidase were obtained from Vector Labs (Burlingame, CA, USA). Fluorescent-labeled secondary antibodies used for confocal microscopy, and horseradish peroxidase (HRP)-conjugated secondary antibodies used for western blots were obtained from ThermoFisher (Waltham, MA, USA).
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3

High-Throughput Serological Protein Profiling

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ELISA plates (Nunc) were coated with 50 μl/well of human proteins in TBS-T (0.1% Tween) overnight at 4° C. The concentrations were: 3 μg/ml for L1CAM (Sino Biological), 1.5 μg/ml for DEL-1 (R&D), 2 μg/ml for angiopoietin-1 (R&D), 0.5 μg/ml for angiopoietin-2 (R&D), 1 μg/ml for vascular endothelial growth factor-A (Peprotech), 3 μg/ml for progranulin (R&D), 0.4 μg/ml for platelet derived growth factor-BB (eBioscience), and 1 μg/ml for hepatocyte growth factor (Sino Biological). Plates were washed and blocked for 1.5 hours at room temperature with 100 μl/well of protein-free blocking buffer (PFB) (0.1% Tween, Pierce, Cat# 37570). Patient sera diluted 1:2000 in PFB-T were added at 50 μl/well in triplicate for 1 hour at 4° C. After washing, 50 μl/well of an HRP-conjugated anti-human IgG (Fab)2 diluted 1:2000 (Southern Biotech, Cat# 6005-05)) was added for 1 hour at room temperature. The plates were washed and 50 μl/well of biotinylated Tyramide (10 μl/ml in amplification diluent concentrate diluted 1:1 with ddH2O, ELAST, PerkinElmer) was added for 30 minutes at room temperature. After washing, wells were incubated with streptavidin-HRP (50 μl/well, concentration of 2 μl/ml) in 1% BSA-PBS-T (0.1% Tween) for 30 min at room temperature. The plate was developed with pNPP substrate (Sigma-Aldrich) and the absorbance measured at 450 nm.
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4

Biomarker Quantification for Surgery

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ELISA kits for GDF15, progranulin, and osteopontin were purchased from R&D Systems (Minneapolis, MN, USA). The blood samples were collected within 2 weeks before surgery except for the post-operative collections. The serum concentrations of these bioactive factors were measured according to the manufacturer's instructions. The protocol was approved by the ethical committee of the University of Fukui Hospital, and written informed consent was obtained from all study patients.
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