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5 protocols using anti ascl1

1

Comprehensive Immunoblotting Antibody Panel

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Anti-Gpx4 (Abcam, ab41787, 1:2000), Anti-xCT (Abcam, ab37185, 1:2000), Anti-Cas9 (Cell signaling, 14697, 1:1000,), Anti-ß-Actin (Sigma, A1978, 1:10,000), Anti-GCLC (Santa Cruz, sc-166345, 1:1000), Anti-Ascl1 (BD Pharmingen, 556604, 1:1000), Anti-Txnrd1 (Cell signaling, 15140S, 1:1000), Anti-Txnrd2 (Cell signaling, 12029, 1:1000), Anti-Acsl4 (Santa Cruz Biotechnology, sc-271800, 1:2000), Anti-Txn1 (Cell signaling, 2429S, 1:1000), Anti-GAPDH (Cell signaling, 97166S, 1:2000), Anti-FSP1 (previously described55 , kindly provided by M. Conrad, undiluted hybridoma supernatant), Anti-REST1 (ThermoFisher, BS-2590R, 1:1000), Anti-REST1 (Abcam, ab21635, 1:1000), Anti-TXNIP (Cell signaling, 14715S, 1:1000), Anti-CD71 (Santa Cruz, sc-65882, 1:2000), Anti-cMyc (Abcam, ab32072, 1:2000), Anti- NCAM (Invitrogen, PA5-79717, 1:1000), Anti-Vimentin (Abcam, ab137321, 1:1000), Anti-YAP1 (Cell signaling, #4912, 1:1000), Anti-Synatophysin (Invitrogen, MA5-14532, 1:1000), Anti-AGPAT2 (Thermo Fisher, PA5-76010, 1:2000), Anti-AGPAT3 (Thermo Fisher, PA5-101343, 1:2000). HRP-conjugated secondary antibodies: goat-anti-mouse-HRP (Linaris GmBH, 20400-1 mg, 1:10,000), goat-anti-rabbit-HRP (Linaris GmBH, 20402-1 mg, 1:10,000), goat-anti-rat-HRP (Sigma, A9037-1 ml, 1:10,000).
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2

Comprehensive Immunostaining Panel for Neural Cell Types

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Antibodies for immunostaining included chicken anti-GFP (1:1000 dilution, Abcam, Cat# ab13970), rat anti-GFP (1:1000, Nacalai Tesque, Cat# GF090R), anti-Sox2 (1:200, Cell Signaling Technology, Cat# 3728), anti-RFP (1:1000, MBL, Cat# PM005), anti-Fabp7 (BLBP, 1:500, Millipore, Cat# ABN14), mouse anti-S100β (1:200, Sigma-Aldrich, Cat# S2657), rabbit anti-S100β (1:500, Abcam, Cat# ab52642), anti-NICD1 (1:200, Cell Signaling Technology, Cat# 4147), anti-GFAP (1:1000, Abcam, Cat# ab4674), anti-Hey1 (1:200, Millipore, Cat# AB5714), anti-Ascl1 (1:200, BD Biosciences, Cat# 556604), anti-PCNA (1:500, Millipore, Cat# NA03), anti-Dcx (1:1000, Abcam, Cat# ab18723), anti-EGFR (1:500, Fitzgerald, Cat# 20-ES04), anti-Vcam1 (1:500, BD Biosciences, Cat# 550547), Hoechst 33342 (1:10000, Molecular Probes).
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3

Western Blot Analysis of Transcription Factors

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Protein lysates were prepared by washing cells with 1 ml of cold PBS and resuspended in lysis buffer [150 mM NaCl, 50 mM tris-HCl (pH 8.0), 1% NP-40, 0.5% Na deoxycholate, 0.1% SDS, and protease inhibitors] for 30 min at 4°C. Lysates were centrifuged at 5°C for 15 min at 13,000 rpm to remove insoluble debris. Protein concentrations were quantified using Pierce BCA (Thermo Fisher Scientific). Proteins were separated by electrophoresis on an SDS–polyacrylamide gel electrophoresis gel (Bio-Rad), transferred to a polyvinylidene difluoride membrane (Thermo Fisher Scientific), and blocked with 5% milk in tris-buffered saline (TBS) with Tween 20. The membranes were immunoblotted with anti–c-Myc (Santa Cruz Biotechnology, sc-40), anti–L-Myc (University of Iowa, PCRP-MYCL1-1A3), anti-vinculin (Sigma-Aldrich), anti-ASCL1 (BD Biosciences, #556604), anti-NeuroD1(Proteintech, 12081-1-AP), anti-Smad2 (Cell Signaling Technology, #5339), anti-Rest (Millipore Sigma, 07-579), anti-Hes1 (Santa Cruz Biotechnology, sc-166410), anti-Brn2 (Cell Signaling Technology, 12137), anti-YAP1 (Proteintech, 13584-1-AP). Immunoblots were quantified using ImageJ.
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4

Protein Extraction and Immunoblot Analysis

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The T-PER Tissue protein extraction reagent (ThermoFisher) was used to extract protein from mouse tumor tissues and cultured human and murine cell lines following the manufacturer’s procedure. The immunoblot experiments were performed with standard procedures. The following antibodies were used in this study: anti-CREBBP (7389; Cell Signaling Technology), anti-E-CADHERIN (3195; Cell Signaling Technology), anti-N-CADHERIN (13116; Cell Signaling Technology), anti-ZEB1 (3396; Cell Signaling Technology), anti-SLUG (9585; Cell Signaling Technology), anti-VIMENTIN (5741; Cell Signaling Technology), anti-ASCL1 (556604, BD Biosciences) anti-NEUROD1 (ab60704; Abcam), and anti-β-ACTIN (A3854; Sigma).
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5

Western Blot Analysis of Cell Lysates

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Cells were lysed in RIPA buffer (150 mM NaCl, 10 mM Tris-HCl pH 7.2 0.1% SDS, 1.0% Triton X-100, 1% sodium deoxycholate, and 5 mM EDTA). Protein concentrations were determined with the Qubit™ Fluorometer (Thermo Fisher Scientific). Proteins were subjected to gel electrophoresis and Western blotting (WB) as previously described, 51 using the following antibodies: anti-MYC (1:1000), anti-BCL2 (1:500), and anti-YAP1 (1:1000) (Cell Signaling Technology), anti-POU2F3 (1:1000) (Merck KGaA), anti-NEUROD1
(1:1000) (Abcam), and anti-ASCL1 (1:500) (BD Biosciences).
Immuno-reactive bands were detected with anti-mouse and antirabbit secondary antibodies conjugated to horseradish peroxidase (HRP) obtained from Santa Cruz Biotechnologies. Signals were detected using Clarity and Clarity Max ECL Western Blotting Substrates (Bio-Rad Laboratories) with Chemidoc System (Bio-Rad Laboratories). Some blots were re-tested to detect a second protein after stripping the revealed antibodies using Restore Western Blot stripping Buffer (Thermo Fisher Scientific). Bands were normalized to total proteins using stain-free technology 52 (Bio-Rad Laboratories). Densitometry analysis was performed using ImageLab (Bio-Rad Laboratories).
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