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33 protocols using staurosporine

1

iBMDM Cytotoxicity Assay

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iBMDMs (3 × 105 cells/well) were seeded one day prior to experimentation in 12-well plates. Prior to the treatments, media was removed and replaced with fresh DMEM. iBMDMs were treated with DMSO vehicle control, Truli (N-(3-Benzylthiazol-2(3H)-ylidene)−1H-pyrrolo[2,3-b] pyridine-3- carboxamide; CSN pharm CSN26140) or Raptinal (Adipogene, AG-CR1-2902) and incubated in CO2 humidified 37°C incubators for 3 hours. For staurosporine experiments, iBMDMs were treated with DMSO vehicle control or staurosporine (Cayman chemical, 81590) for 4 hours.
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2

MDCK and NRK-52E Cell Culture and PKC Modulation

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MDCK (NBL-2) cells (CVCL_0422; Cell Lines Services, Eppelheim, Germany) were cultured in Dulbecco’s modified Eagle medium F12 (DMEM/F-12; Gibco, Life Technologies, Darmstadt, Germany) with additional 5% fetal bovine serum (Gibco), 100 U/ml penicillin, 100 μg/ml streptomycin (Gibco), and 2 mM glutamine (Gibco). NRK-52E cells (ECACC 87012902; European Collection of Authenticated Cell Cultures, Salisbury, UK) were cultured in Dulbecco’s modified Eagle medium (DMEM) plus 5% newborn calf serum, 100 U/ml penicillin, and 100 μg/ml streptomycin (Gibco). For experiments, cells were plated at a density of 1.5×105 cells per well (MDCK) or 2×105 cells per well (NRK-52E) in 6-well plates at 5% CO2 and 37°C. After 24 h, cells were treated with PKC activator phorbol-12-myristate-13-acetate (PMA) (0.01–600 nM as indicated; Peprotech, Hamburg, Germany) and/or PKC inhibitors staurosporine (0.01–1 nM as indicated; Cayman Chemicals, Ann Arbor, MI, USA), 300 nM sotrastaurine (United States Biological, Salem, MA, USA), or 40 nM Gö6976 (Biomol, Hamburg, Germany) for further 24 h. Control cells were incubated with the respective amount of solvent dimethyl sulfoxide (DMSO; AppliChem, Darmstadt, Germany) for all experiments.
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3

Compound Screening for Drug Discovery

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Carbonyl cyanide m-chlorophenyl hydrazine (CCCP) and okadaic acid were from Sigma (Sigma-Aldrich, St. Louis, MO, USA). AZD1080, CHIR98014, cyclosporin A, GNE7915, LRRK2in1, oligomycin, rotenone, SB216763, sorafenib, staurosporine, and valinomycin were from Cayman Chemical Company (Ann Arbor, MI, USA). Tipranavir (#11285) was obtained through the NIH’s HIV Reagent Program, which is supported by National Institute of Allergy and Infectious Diseases. 10 mM stock solutions in dimethyl sulfoxide (DMSO) were prepared for all compounds with the exception of staurosporine (1mg/ml in ethyl acetate) and stored at −20°C until further use. Working dilutions were prepared fresh for each experiment.
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4

Pharmacological Inhibitor Acquisition Protocol

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The AKT inhibitors ipatasertib (#S2808), AZD5363 (#S8091), MK2206 (#S1078), SC66 (#S5313), and the BH3 mimetic ABT-737 (#S1002) were purchased from SelleckChem (Houston, TX, USA). ARQ-092 (#21388), perifosine (#1008112), PHT-427 (#24188), staurosporine (#81590), digitonin (#14952), and FCCP (#15218) were purchased from Cayman Chemical. Oligomycin (#O4876), β-mercaptoethanol (#M3148), and endoxifen (E8285) were purchased from Sigma Aldrich (St Louis, MO, USA).
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5

Ferroptosis Induction and Inhibition Compounds

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Menaquinone-4 (V9378), phylloquinone (V3501), menadione (M5625), MK4 epoxide (75618), vitamin K3 epoxide (51455), α-TOC (T3251), warfarin (A2250), warfarin sodium (PHR1435), dicoumarol (M1390), l-buthionine sulfoximine (BSO; B2515) N-acetyl-l-cysteine (A7250), lipopolysaccharide (LPS; L2880) and MCC950 (5381200001) were purchased from Sigma-Aldrich. Ferrostatin-1 (Fer1; 17729), RSL3 (19288), FINO2 (25096), ML162 (20455), ML160 (23282) and staurosporine (81590) were purchased from Cayman. The following chemicals were obtained as indicated: erastin (329600, Merck Millipore), 17-AAG (A10010, Adqoo), l-glutamate (16911-22, Nacalai tesque), menadiol (M323135, TRC), iFSP1 (8009-2626, ChemDiv), liproxstatin-1 (Lip1, S7699, Selleckchem), BV-6 (S7597, Selleckchem), Trolox (56510, Fluka), recombinant mouse TNF (PMC3014, Thermo Fishier), nigericin (N1495, Thermo Fisher), zVAD-FMK (ALX-260-02, Enzo Life Sciences) and Nec 1s (2263, BioVision).
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6

Evaluating Inhibitors' Effects on Cells

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Cycloheximide, nocodazole, sodium azide, chloramphenicol, rifampin, nalidixic acid, and a cocktail of protease inhibitors cocktail were purchased from Wako. Cytochalasin D was purchased from Focus Biomolecules (Plymouth Meeting, PA) and staurosporine from Cayman Chemical Company (Ann Arbor, MI). The solvents used and final concentrations were as follows: Cycloheximide, 100 μg/ml in dimethyl sulfoxide (DMSO); nocodazole, 10 μg/ml in DMSO; sodium azide, 50 mM in PBS; chloramphenicol, 5 μg/ml in ethanol; rifampin, 0.25 mg/ml in DMSO; nalidixic acid, 5 μg/ml in 1N NaOH; protease inhibitor cocktail containing aminoethyl benzylsulfonyl fluoride (AEBSF), 100 mM in aprotinin, 80 μM in DMSO; E-64, 1.5 mM in DMSO, leupeptin, 2 mM, bestatin, 5 mM, pepstatin, 1 mM; Cytochalasin D, 1 μg/ml in DMSO; and staurosporine, 1 μM in ethyl acetate. All chemicals and solvents were tested at a concentration used for possible adverse effects in Ca9-22 cells, as compared with cells without the inhibitor, by examining the morphology of the cells and cell viability with MTT assay (S2 Fig). Moreover, all chemicals and solvents were tested at the appropriate concentrations and found to produce no reduction in P. gulae growth (S3 Fig).
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7

Kinase Inhibitor Library for Cell Treatments

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The kinase inhibitor library, composed of 149 selective or broad-spectrum kinase inhibitors dissolved in DMSO (10 mM stock concentration), was purchased from Cayman Chemicals (#10505). The following reagents were used for cell treatments at given concentrations: LPS (Escherichiacoli O55:B5, #L2880, Sigma-Aldrich, 100 ng ml−1), recombinant human TNFα (rHuTNF, #50435.50, Biomol, 10 ng/ml), Birinapant/SM (#HY-16591, MedChem Express, 1 µM), pan-caspase inhibitor zVAD-fmk (#4026865.0005, Bachem, 25 μM), MK2 inhibitor PF3644022 (#4279, Tocris, 5 μM), RIPK1 inhibitor Nec-1 (#BML-AP309-0020, Enzo Life Sciences, 50 µM), RIPK1 inhibitor Nec-1s (# 10-4544-5 mg, Tebu-Bio, 50 µM), RIPK3 inhibitor GSK872 (#HY-101872, MedChem Express, 5 µM), IKKβ inhibitor BMS345541 (#Axon 1731, Axon Medchem, 5 µM), TBK1/IKKε inhibitor BX795 (#T1830, Tebu-Bio), 5-Iodotubercidin (#HY-15424, MedChem Express, 2.5–10 µM), ABT-702 dihydrochloride (#HY-103161, MedChem Express, 5 µM), Staurosporine (#81590, Cayman, 5 µM), Etoposide (#E1383, Sigma, 5 µM), Doxorubicin (#15007, Cayman, 5 µM), Gemcitabine (#S1714, Selleckchem, 100 nM).
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8

Isolation and Characterization of Hap H

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The indole alkaloid Hap H was isolated from Fischerella ambigua as previously described (11 (link)). Reference compounds were obtained from different sources. Rocaglamide was purchased from Enzo Life Sciences, Inc. (Farmingdale, NY, USA). Daunorubicin was purchased from Tocris, Bristol, UK. Staurosporine was obtained from Cayman Chemical (Ann Arbour, MI, USA). Taxol was obtained from Tocris Bioscience, Bristol, UK. Hydrogen peroxide was obtained from Fluka Biochemika, Steinhiem, Switzerland.
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9

Caspase-mediated Apoptosis Evaluation

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Apoptosis was evaluated with the Caspase-Glo 3/7 assay kit (Promega; Madison, WI, USA) according to the manufacturer’s instructions. Briefly, 10,000 cells were plated in each well of 96-well white 96-well plates and treated with either 0.1% DMSO (vehicle control), or TCH-165 (1, 4, 5, and 10 μM) for 24 h. Staurosporine (81590, Cayman), an apoptosis inducer, was used as a positive control at 10 μM concentration for 3 h of incubation. After the incubation, the caspase reagent was added to the cells and incubated at 37 °C for 30 min. The luminescent signal was detected by the EnVision plate reader (PerkinElmer; Waltham, MA, USA) and the data were analyzed by Graph Pad Prism (9.2.0, Graph Pad Software Inc., San Diego, CA, USA).
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10

Apoptosis Induction in IMR-90 Cells

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Non-senescent or SEN(IR) cells were cultured in the presence of 10 μM ABT-263 for 24 h. Non-senescent IMR-90 fibroblasts were treated with either 1 μM staurosporine (Cayman) or 100 ng/mL recombinant TRAIL (Abcam) for 24 h before collection. Media were centrifuged twice at 5000xg for 15 minus at 4°C for clearing of apoptotic bodies and stored at −80°C until analysis.
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