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166 protocols using mouse anti v5

1

Antibody Immunoblotting and Immunostaining Protocol

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The primary antibodies used for immunoblotting were mouse anti-V5 (1:5000, Invitrogen), guinea pig anti-Axin (1:1000, [17 (link)]), rabbit anti-Kinesin Heavy Chain (1:10000, Cytoskeleton), mouse anti-alpha-Tubulin (1:10000, DM1A, Sigma), rabbit anti-alpha-Tubulin (1:10000, Sigma), rabbit anti-Gluthathione-S-Transferase (1:10000, Invitrogen), rabbit anti-phospho-LRP6 [Thr1572] (1:1000, Millipore), mouse anti-Nervana antibody (Nrv5F7, 1:1000, DSHB), and guinea pig anti-Arrow antibody (1:1000, [74 (link)]). The primary antibodies used for immunostaining were guinea pig anti-Axin (1:1000, [17 (link)]), rabbit anti-β-gal (1:1000; MP Biomedicals), mouse anti-Arm (1:20; DSHB), mouse anti-Fas III (1:20; DSHB), mouse anti-Discs Large (1:20; DSHB), rabbit anti-GFP (1:200; Invitrogen), mouse anti-V5 (1:5000; Invitrogen), rabbit anti-Apc2 (1:1000; [75 (link)]), and guinea pig anti-Senseless (1:1000, [76 (link)]).
The secondary antibodies used for immunoblotting were: goat anti-rabbit HRP conjugate (1:10000, Biorad), goat anti-mouse HRP conjugate (1:10000, Biorad), and goat anti-guinea pig HRP conjugate (1:10000, Jackson ImmunoResearch). The secondary antibodies used for immunostaining were goat or donkey Alexa Fluor 488, 555 or Cy5 conjugates (1:400; Invitrogen).
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2

Antibody Immunostaining and Immunoblotting Protocol

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The primary antibodies used for immunostaining were mouse anti-V5 (1:5000; Invitrogen), mouse anti-Wingless (1:200, 4D4 concentrated antibody, Developmental Studies Hybridoma Bank, DSHB). The secondary antibodies used for immunostaining were goat or donkey Alexa Fluor 488 or 555 conjugates (1:400; Invitrogen). The primary antibodies used for immunoblotting were mouse anti-V5 (1:5000, Invitrogen), guinea pig anti-Axin (1:1000, [54 (link)]), rabbit anti-Kinesin Heavy Chain (1:10000, Cytoskeleton), mouse anti-Arm (1:100, N2 7A1, DSHB), mouse anti-alpha-Tubulin (1:10000, DM1A, Sigma), rabbit anti-alpha-Tubulin (1:10000, Sigma), rabbit anti-Gluthathione-S-Transferase (1:10000, Invitrogen), guinea pig anti-Apc2 (GP10) 1:5000 [44 (link)]; rabbit anti-phospho-LRP6 [Thr1572] (1:1000, Millipore), rat anti-Dishevelled (1:1000, [70 (link)]), and guinea pig anti-Arrow (1:1000, [71 (link)]). The secondary antibodies used for immunoblotting were: goat anti-rabbit HRP conjugate (1:10000, Biorad), goat anti-mouse HRP conjugate (1:10000, Biorad), and goat anti-guinea pig HRP conjugate (1:10000, Jackson ImmunoResearch).
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3

Phosphorylation Detection via Phos-tag SDS-PAGE

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Phos-tag SDS-PAGE and Western blotting were performed according to previous studies (Liu et al. 2017 (link)). In brief, Phos-tag SDS-PAGE gels were made adding 30 μM Phos-tag reagent according to the manufacturer’s protocol (Wako Chemical). Samples were resolved on SDS-PAGE with Phos-tag and detected via Western blotting mouse anti-V5 (Life Technologies, R960-25) and IRDye 680 goat anti-mouse (LI-COR, 926-32220). Bands were quantified using Image studio lite software (Li-COR). All bands that migrate slower than the most intensive band were considered as putative phosphorylated forms. A small subset of these bands displayed insulin/rapamycin responsiveness.
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4

Proximity Ligation Assay in HEK293T Cells

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HEK293T (ATCC) cells, whose morphology was used for identification and are routinely used in the lab, were grown in DMEM (Dulbecco’s Modified Eagle’s Medium) and supplemented with L-glutamine, penicillin/streptomycin (ThermoFisher Scientific), and 10% fetal bovine serum (Atlanta Biologicals, Flowery Branch, GA), and, one day before transfection, plated on glass coverslips in a 24-well plate at a density of 0.15 million cells/mL. Constructs were transfected using standard calcium-phosphate protocol. Transgenes were under the control of a UAS promoter and co-transfected with a CMV-Gal4 construct. Cells were fixed with 4% paraformaldehyde in 1X PBS approximately 40 hr post transfection. PLA was performed using Duolink/PLA reagents (Sigma-Aldrich), according to the manufacturer’s protocol. The blocking solution used was 5% normal goat serum in 0.3% Triton-X solution in 1X PBS. The following primary antibodies were used: mouse anti-V5 (Life Technologies (RRID:AB_2556564); at 1:500); rabbit anti-GFP (Life Technologies (RRID:AB_221569); at 1:1000). Cells were imaged using the Zeiss LSM700 confocal microscope with a 63x oil objective and images were acquired using the Zen software; GFP+ cells were counted manually and scored as PLA+ if they had more than three puncta of PLA reaction product.
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5

Immunofluorescence Microscopy of Chromosome Spreads

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Chromosome spreads were performed as previously described (Wahba et al., 2013 (link)). Slides were incubated with a mouse anti-FLAG monoclonal (Sigma-Aldrich) at 1:2000, mouse anti-V5 (Life Technologies, Carlsbad, CA) at 1:2000, polyclonal rabbit anti-Pds5 at 1:2000, or polyclonal rabbit anti-Mcd1 at 1:2000 dilutions. The primary antibody was diluted in blocking buffer (5% bovine serum albumin, 0.2% milk, 1× phosphate-buffered saline, and 0.2% Triton X-100). The secondary Cy3-conjugated goat anti-mouse antibody (115-165-003) was obtained from Jackson ImmunoResearch (West Grove, PA) and diluted 1:2000 in blocking buffer. Indirect immunofluorescence was observed using an Olympus IX-70 microscope with a 100×/NA 1.4 objective and Orca II camera (Hamamatsu, Bridgewater, NJ).
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Antibody Panel for N-terminal Acetyltransferases

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The following antibodies were used: rabbit anti-Naa10 (Abcam #ab155687), rabbit anti-Naa10 (Protein Tech #14803-1-AP), rabbit monoclonal anti-NAA10 (Cell Signaling, #13357), goat anti-Naa10 (Santa Cruz, #sc-33256), rabbit anti-Naa10 (Santa Cruz, #sc-33820), rabbit anti-Naa11 (Novus Biologicals; #NBP1-90853), mouse anti-Naa15/NARG1 (Abcam; #ab60065), rabbit polyclonal anti-NAA15 (Arnesen et al., 2005 (link)), rabbit anti-Naa50 (LifeSpan BioSciences; #LS-C81324-100), rabbit anti-FLAG (Sigma; #F7425), mouse anti-GAPDH (Abcam; #ab9484), goat anti-actin (Santa Cruz, #1615), mouse anti-GST (GenScript; #A00865), and mouse anti-V5 (Life Technologies; #R960-25). The antibody against the potential mNaa10 paralog mNaa12 (Gm16286, UniProt: Q9CQX6) was raised in rabbits after immunization with a synthetic peptide of the Naa12 C-terminus (aa191-205: QENLAGGDSGSDGKD-C) conjugated to OVA by PrimmBiotech.
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7

Co-immunoprecipitation of β-actin and V5-PFN1

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Co-immunoprecipitation of ß-actin with V5-PFN1 in lysates of HEK293 cells was performed as previously described [2 (link)]. For Western blot detection of V5-PFN1 and ß-actin we used mouse anti-V5 (Life Technologies Cat# R96025 RRID:AB_10050879) and rabbit anti-ß-actin (Cell Signaling Technology Cat# 4970 RRID:AB_2223172) antibodies. Secondary antibodies were goat anti-mouse IgG-HRP (Life Technologies Cat# G21040 RRID:AB_11180340) and goat anti-rabbit IgG-HRP (Life Technologies Cat# G21234 RRID:AB_10837906), respectively.
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8

Western Blotting Protein Detection

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Western blot analysis was performed essentially as previously described (Vucetic et al., 2008 (link); Zhao et al., 2009 (link)). Primary antibodies used were goat anti-GAPDH (sc-48176, Santa Cruz), mouse anti-V5 (R960-25, Life Technologies), mouse anti-FLAG (F1804, Sigma-Aldrich,), mouse anti-H3 histone (10799, Abcam) and rabbit anti-HP1α (2616, Cell Signaling, Beverly, MA). Secondary antibodies used were donkey anti-mouse IRDye 800CW, donkey anti-rabbit IRDYE 800CW, and donkey anti-goat IRDye 680CW purchased from LI-COR, Lincoln, NE. Images were captured and quantitated using the LI-COR Odyssey instrument and software. GAPDH levels were used as the loading control.
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9

Microscopic Imaging of S2 Cells

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S2 cells were fixed and processed as previously described (Rogers and Rogers, 2008 (link)) by spreading S2 cells on concanavalin A–coated glass-bottom dishes and fixing with ice-cold methanol. Primary antibodies were diluted to concentrations ranging from 1 to 20 µg/ml. They included rabbit anti–PLP (Rogers et al., 2009 (link)), guinea pig anti-Asl (Klebba et al., 2013 (link)), rat anti-Cep135, rat anti–Asl NT, and mouse anti-V5 (Life Technologies) antibodies. Goat secondary antibodies (conjugated with Cy2, Rhodamine red-X, or Cy5 [Jackson ImmunoResearch]) were used at 1:1,500. Hoechst 33342 (Life Technologies) was used at a final concentration of 3.2 µM. Cells were mounted in 0.1 M n-propyl galate, 90% (by volume) glycerol, and 10% PBS solution. Specimens were imaged using a DeltaVision Core deconvolution system (Applied Precision) equipped with an Olympus IX71 microscope, a 100× objective (NA 1.4), and a cooled CCD camera (CoolSNAP HQ2; Photometrics). Images were acquired with softWoRx v.1.2 software (Applied Science). Superresolution microscopy was performed using a Zeiss ELYRA S1 (SR-SIM) microscope equipped with an AXIO Observer Z1 inverted microscope stand with transmitted (HAL), UV (HBO), and solid-state (405/488/561-nm) laser illumination sources, a 100× objective (NA 1.4), and EM-CCD camera (Andor iXon). Images were acquired with ZEN 2011 software.
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10

Immunohistochemistry Profiling of Neural Markers

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Immunohistochemistry was performed as previously described (Lammel et al., 2012). Briefly, animals were intracardially perfused with 4% paraformaldehyde in PBS and post-fixed at 4 °C overnight. 50 µm coronal sections were sliced on a Leica VT1000 vibratome. Primary antibodies used were: guinea pig anti-Vglut1 (1:250; Millipore), guinea pig anti-Vglut2 (1:1000; Millipore), rabbit anti-TH (1:1000; Millipore), rabbit anti-NeuN (1:2000; Abcam), mouse anti-GAD65 (1:250; DSHB U. of Iowa), guinea pig anti-substance P (1:500; Abcam). For spaghetti monster experiments, epitope antibodies used were: rabbit anti-FLAG (1:1000; Sigma), goat anti-myc (1:1000; Abcam), mouse anti-V5 (1:1000; Life Technologies), rat anti-HA (1:1000; Roche). Alexa Fluor dyes conjugated to either 405, 488, 568, or 647 were used for secondary antibodies (Life Technologies, Abcam). All dilutions used were 1:1000 except for Alexa Fluor 405 at 1:500. All images were acquired with an Olympus FluoView FV1200 confocal microscope.
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