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Ultra emccd camera

Manufactured by Oxford Instruments

The Ultra EMCCD camera is a high-performance imaging device designed for low-light applications. It utilizes electron-multiplying charge-coupled device (EMCCD) technology to amplify the signal, enabling the detection of extremely faint signals. The camera features a large sensor size, high quantum efficiency, and low noise characteristics, making it suitable for various scientific and research applications that require sensitive imaging.

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12 protocols using ultra emccd camera

1

Multimodal Imaging of Cellular Dynamics

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For epifluorescence imaging, all Z-stack images were obtained with 0.5 microns between slices. Images were acquired in an epifluorescence microscope (Nikon Ti2Eclipse) with an X60/1.25NA and X100/1.3NA oil immersion objectives for bead and spreading assays, respectively. For confocal microscopy, images were acquired in a Nikon Ti2Eclipse inverted microscope with 60X/1.45NA oil immersion for bead and spreading assays, with a Z-stack of 0.5 microns. For Total internal reflection fluorescence microscopy (TIRFM), images were acquired in Nikon Ti2Eclipse inverted microscope with a 100x/1.50 NA oil immersion lens and an iXON Ultra EMCCD camera at 37°C. B-cells expressing LifeAct-mCherry were plated on Ag-coated glass chambers (NuncTM Lab-TekTM II). Images were acquired for 30 min at 15 s per frame for spreading assay and for 1 min at 0.75 s per frame for lysosome, proteasome, and actin retrograde flow tracking. For Ayriscan acquisition, images were obtained in the Zeiss LSM880 Airyscan Confocal microscope with a 63X/1.4NA oil immersion lens, with a Z-stack of 0.2 μm. The images were processed using Zeiss Black Zen software and analyzed with FIJI.
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2

Multimodal Imaging of Transgenic Worms

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Confocal fluorescence images were acquired on a Nikon Eclipse Ti CSU-X1 equipped with 405, 488, 561, and 640 nm lasers. Emission was collected through 455/50, 525/36, 605/70, or 700/75 nm filters on an Andor iXon Ultra EMCCD camera using the NIS-Elements software. Images were visualized using ImageJ Fiji. Maintenance and selection of transgenic worms expressing fluorescent markers were performed using a Leica M165 FC fluorescent stereo microscope equipped with a Sola SE-V light source. Photobleaching and wide-field experiments were performed using a Leica TIRF microscope equipped with an infinity scanner using 488 nm laser excitation. Emission was collected through a GFP-T filter cube on a Hamamatsu ORCA-Flash4 camera.
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3

TIRF Microscopy of Fluorescent Proteins

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TIRF microscopy experiments were performed on a home-built system based on a Zeiss Axiovert 200 microscope equipped with a 100×NA=1.46 Plan-Apochromat objective (Zeiss). Samples were illuminated stroboscopically using a 488 nm OPSL laser (Coherent) for excitation of mGFP-GPI, or a 642 nm diode laser (TOPTICA) for excitation of the Atto647N Fab or Cholesterol-KK114. After appropriate filtering, the fluorescence signal was recorded on an Andor IXON Ultra EMCCD camera.
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4

Fluorescence Imaging Protocol

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All fluorescence images shown in the paper are wide-field images, acquired using Nikon fluorescence microscope and digital Hamamatsu Orca AG and Andor IXon Ultra EMCCD camera.
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5

Fluorescence Imaging Protocol

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All fluorescence images shown in the paper are wide-field images, acquired using Nikon fluorescence microscope and digital Hamamatsu Orca AG and Andor IXon Ultra EMCCD camera.
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6

Calcium Imaging of Neuronal Activity

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Neurons were incubated for 10 min in culture media containing 5.6 µM Fluo-4 AM (Life Technologies, Grand Island NY). Coverslips were then removed and washed for 2 min prior to recording with Tyrode's solution containing (in mM) 150 NaCl, 4 KCl, 1.25 MgCl2, 2 CaCl2 and 10 TES buffer, pH adjusted to 7.4. Where solutions are noted to have 0 mM Ca+ the solution is prepared from deionized water with no added Ca2+. All solution changes except +100 mM hypertonic sucrose include 2 min of wash time in the new solution to ensure full application of the new conditions. Neurons were imaged using a 40× objective on a Nikon TE2000-U microscope. Images were collected at 10 frames per second using an Andor xION Ultra EMCCD camera for a duration of ∼ 2 min. Event frequencies per ROI were estimated using the population average obtained from 72 ROIs monitored per experiment. Our analysis, therefore, refers only to average per ROI frequency per experiment. Illumination was provided by a Sutter DG-4 arc lamp using a 470 ± 40 nm bandpass excitation filter. Post experiment synapse visualization used a 548 ± 10 nm filter to excite Syb2-mO and Tyrode's solution containing 50 mM NH4Cl to maximize fluorescence. The emission filter in place allowed 515 ± 15 nm and 590 ± 20 nm bands to pass. Fluo-4 traces were generated by measuring circular ROI, 3 µm radius centered over Syb2-mO puncta.
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7

Confocal Imaging of Virus Samples

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For confocal imaging of virus samples and cells, we use a Nikon Eclipse Ti microscope body, equipped with a Yokogawa CSU-X spinning disk, Andor Zyla sCMOS camera, 60X and 100X APO TIRF objectives (1.49 NA), and a Spectral Applied Research ILE-3003 laser launch for illumination via laser lines at 405nm, 488nm, 561nm, and 640nm. Because the vast majority of viruses immobilized on coverslips lie in-plane in our samples with a thickness less than our depth of focus, we are able to image the entire particle with a single z-slice. For data from different conditions within replicates, we imaged samples in immediate succession to avoid any effect from drift in the optical system over time; similarly, we acquired data from replicates to be combined typically within ~1 month of each other. For TIRF imaging, we use the same microscope body, objectives, and laser lines, but an Andor iXon Ultra EMCCD camera in place of the sCMOS camera for the increased sensitivity necessary for calibrating counts of molecules on the surface of labeled viruses (see “Quantifying HA and NA abundance”).
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8

TIRF Microscopy of Fluorescent Proteins

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TIRF microscopy experiments were performed on a home-built system based on a Zeiss Axiovert 200 microscope equipped with a 100×NA=1.46 Plan-Apochromat objective (Zeiss). Samples were illuminated stroboscopically using a 488 nm OPSL laser (Coherent) for excitation of mGFP-GPI, or a 642 nm diode laser (TOPTICA) for excitation of the Atto647N Fab or Cholesterol-KK114. After appropriate filtering, the fluorescence signal was recorded on an Andor IXON Ultra EMCCD camera.
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9

Live-cell TIRF Imaging of Mitosis

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Live cell TIRF imaging was performed on a Nikon N-STORM microscope using a Nikon 100x Plan Apo 1.49 NA objective and an Andor iXon Ultra EMCCD camera. Cells in metaphase were identified using the H2B mCherry channel, following which images were acquired every 10–30 s in TIRF in the green channel. Cells were imaged until they had completed telophase and initiated cell spreading. A camera gain of 110 was used. The hardware was controlled using Nikon Elements AR software.
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10

Visualizing B-cell Spreading on Antigen

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Total internal reflection fluorescence microscopy (TIRFM) images were acquired in Nikon Ti2Eclipse inverted microscope with a 100x/1.50 NA oil immersion lens and a iXON Ultra EMCCD camera at 37°C. B-cells expressing LifeAct-mCherry were plated on Ag-coated glass chambers (Nunc™ Lab-Tek™ II). Images were acquired for 30 min at 15 s per frame for spreading.
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