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25 protocols using ammonium dihydrogen phosphate

1

Ceftaroline Dihydrochloride Quantification

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Ceftaroline dihydrochloride was kindly supplied by Pfizer Inc. Acetonitrile HPLC gradient (ACN) and methanol were purchased from Scharlau (Barcelona, Spain), and ammonium dihydrogen phosphate was purchased from Sigma-Aldrich Chemie Gmbh (Steinheim, Germany). The ultrapure water was obtained from the Mili-Q® Plus apparatus (Millipore, Burlington, MA, USA).
Blank plasma from healthy donors, used to prepare calibration standard and quality control (QC) samples, was provided by the Basque Biobank (www.biobancovasco.org, accessed on 21 May 2021) and was processed following standard operation procedures with appropriate approval from the Ethical and Scientific Committees (Code CES-BIOEF 2020-34).
Plasma from critically ill patients was processed following a protocol previously approved by the Basque Clinical Research Ethics Committee (EPA2018019 (SP)). Samples and data from these patients were provided by the Basque Biobank (www.biobancovasco.org, accessed on 21 May 2021) and were processed following standard operation procedures with appropriate ethical approval.
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2

HPLC Analysis of Nitrogenous Bases

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The high-performance liquid chromatography (HPLC) system (Waters, Milford, MA) consisted of a series 600 controller, a series 717 plus autosampler, and a series 996 photodiode-array detector, connected to a cartridge column (GL Sciences, Tokyo, Japan; average particle size of 5 μm) and a Cosmosil packed 5C18-MS-II column (Nacalai, San Diego, CA; internal diameter of 4.6×250 mm; average particle size of 5 μm). The mobile phase consisted of buffer A (2.5% methanol in 0.01 M ammonium dihydrogen phosphate, pH 5.3) and buffer B (20% methanol in 0.01 M ammonium dihydrogen phosphate, pH 5.1). Elution started with 100% buffer A and consisted of the following linear gradient steps: 0–10 min, 0–25% buffer B; 10–20 min, 25–40% buffer B; 20–60 min, 40–100% buffer B. A flow rate of 0.9 ml/min and an injection volume of 20 μl was used. Temperature of the column was maintained at 25°C. Detection was done at a wavelength of 260 nm. Deionised water used for preparation of the HPLC mobile phase and sample dilution was prepared with the Milli-Q purification system (Millipore, Bedford, MA). Nitrogenous bases, nucleosides, HPLC-grade methanol, and ammonium dihydrogen phosphate were obtained from Sigma-Aldrich (St. Louis, MO).
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3

Lipidomics Analysis of Sphingolipids

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Propan-2-one, methanol, 1-butanol, LC-MS grade water, primuline yellow dye, ammonium dihydrogen phosphate, 3,5-Di-tert-4-butylhydroxytoluene (BHT) and ammonium formate were from Sigma-Aldrich (Saint Louis, MO, USA). Ethanol and high performance liquid chromatography (HPLC)-analytical grade chloroform (CHCl3) were respectively from J.T. Baker (Center Valley, PA, USA) and Carlo Erba (Cornaredo, MI, Italy). N-lignoceroyl-D-erythro-sphingosine (Cer C24:0) 1,2-Dipalmitoyl-sn-Glycero-3-Phosphocholine (DPPC), Cardiolipin (CL), 1,2-Dipalmitoyl-sn-Glycero-3-Phosphoethanolamine (DPPE), D-glucosyl-ß-1,1′-N-stearoyl-D-erythro-sphingosine-d5 (HexCer), N-lauroyl-D-erythro-sphingosine, N-lauroyl-D-erythro-sphinganine, N-lauroyl-D-erythro-sphingosylphosphorylcholine N-lauroyl-D-erythro-sphinganylphosphorylcholine, D-glucosyl-ß−1,1′-N-lauroyl-D-erythro-sphingosine, D-lactosyl-ß-1,1′ N-lauroyl-D-erythro-sphingosine and C17 d-erythro-dihydrosphingosine-1-phosphate lipids standards were from Avanti Polar Lipids (Alabaster, Alabama, USA). SL standard mixture, containing SM and Sulfatides (SLF) was from Matreya LLC (Pleasant Gap, PA, USA).
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4

Comprehensive Molecular Biology Toolkit

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E. coli DH5α (NEB C2987), NEBTurbo (NEB C2984), Klenow (NEB M0210), BL21(DE3) (Agilent 200131), E. coli JM110 (Yanisch‐Perron et al., 1985 (link)), Ni‐NTA resin (Merck 69670), CentriPure P25 columns (emp Biotech Cat. No. CP‐0108), pyruvate kinase (Sigma P1506), lactate dehydrogenase (Sigma L2500), dAMP (Sigma D6375), dCMP (Sigma D7750), dGMP (Sigma D9500), dTMP (Sigma T7004), dADP (Sigma D600), dCDP (Cayman Chemicals 22982), dGDP (Sigma D2950), dTDP (Sigma T9375), NADH (Acros Organics 271100010), PEP (Cayman Chemicals 19192), ATP (Sgima A7699), ADP (Acros Organics 10143940), dNTP Set (NEB N0446), Monarch genomic DNA extraction kit (NEB T3010), 10 kDa MWCO columns (Merck 10125580), tetrabutylammonium phosphate (Fisher Scientific 10569092), ammonium dihydrogen phosphate (Sigma 101126), SeeBlue Plus2 pre‐stained protein ladder (ThermoFisher LC5925), NSR pre‐stained protein ladder (Newmarket Scientific MG20‐10101), 1 kb DNA ladder (NEB N3232), 1 kb plus DNA ladder (NEB N3200), HindIII‐HF (NEB R3104S), Exonuclease III (NEB M0206), benzonase (Sigma E1014).
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5

Vancomycin Plasma Concentration Monitoring

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VAN and ammonium di-hydrogen phosphate were purchased from Sigma-Aldrich Chemie GmbH. Acetonitrile was HPLC grade and all other reagents were analytical grade (ethyl acetate, perchloric acid, phosphoric acid etc.). The citrated plasma from healthy donors was supplied by the Department of Transfusion Medicine, University Hospital Muenster (UKM) Germany. Double distilled water was prepared in laboratory using Milli-Q® direct water purification system.
Serum samples from patients receiving VAN were supplied by the Central laboratory of the UKM, Germany. The samples from patients with suspected or documented infections with VAN-sensitive bacteria were drawn as part of their clinical routine in order to monitor the VAN concentrations.
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6

Vancomycin-Loaded Chitosan-PLGA Nanoparticles

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Vancomycin HCl was purchased from Tocris
Bioscience (Minneapolis). Chitosan medium molecular weight (Mw 47,000
Da), poly(vinyl alcohol) (PVA; Mw 146,000–186,000 Da), poly(ethylene
oxide) (PEO; Mw 600,000), and ammonium dihydrogen phosphate were purchased
from Sigma-Aldrich (Burlington). Glacial acetic acid high-performance
liquid chromatography (HPLC) grade, dimethylformamide (DMF), hexafluoroisopropanol
(HFIP), dichloromethane (DCM), and acetone were purchased from Thermo
Fisher Scientific (Waltham). Poly(lactic-co-glycolic
acid) (PLGA) 50:50 was purchased from Durect (Cupertino).
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7

Synthesis of Ceramic Precursor Solutions

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Calcium nitrate (99%), cerium nitrate (99%), nickel nitrate (98.5%), ammonium dihydrogen phosphate (99%), and ammonia solution (25 vol% aqueous) were purchased from Sigma-Aldrich and used without pretreatment.
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8

Agarose-Polymer Composite Electrolyte Synthesis

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Agarose
(low electroendosmosis, CAS: 9012-36-6,
negligible sulfate anion amount), glycerol (C3H8O3), poly(vinyl alcohol) (PVA, hydrolysis degree of 99%, Mw of 85000–124000 g mol–1), sodium perchlorate (NaClO4), ethylene carbonate (EC),
isopropyl alcohol (iPrOH, ≥99.8%,), butanol (BuOH, 99.9%),
propylene carbonate (PC), fluoroethylene carbonate (FEC), N-methyl-2-pyrrolidone (NMP, 99%), poly(vinylidene fluoride)
(PVDF, Mw of 534000 g mol–1), ammonium metavanadate (NH4VO3, ≥99.5%),
citric acid (C6H8O7, ≥99.5%),
and ammonium dihydrogen phosphate (NH4H2PO4, 99.999%) have been purchased from Sigma-Aldrich. Polyvinylpyrrolidone
(PVP, Mw of 40000 g mol–1) was obtained from Fluka Chemika, Super P carbon black was obtained
from TIMCAL Graphite & Carbon, and sodium hydroxide (NaOH, 98.8%)
was purchased from VWR Chemicals. All chemicals have been used as
received without any further purification. For electrochemical studies,
25 μm thick Celgard membranes (2325) and glass microfiber separators
(GF/D, Whatman) were employed as received.
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9

Inorganic Chemical Synthesis Protocol

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Calcium hydroxide, ammonium dihydrogen phosphate, Calcium nitrate tetrahydrate, citric acid, and sodium hydroxide were all purchased from Sigma-Aldrich (Korea). Diammonium hydrogen phosphate was purchased from Junsei (Japan). Ammonium hydroxide and hydrochloric acid were purchased from Daejung (Korea).
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10

Synthesis of alpha-cyclodextrin conjugates

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Alpha-cyclodextrin, N,N′-carbonyldiimidazole (CDI), imidazole, and ammonium dihydrogen phosphate were purchased from Sigma Aldrich (St. Louis, MO, USA). Milli Q water was generated using an Ultramatic Wasserlab purification system (Pamplona, Spain). For pH adjustment, 37% hydrochloric acid and 85% ortho-phosphoric acid (Scharlab, Madrid, Spain) were used. Analytical grade acetonitrile was purchased from Honeywell (Charlotte, NC, USA). Bentonites and zeolites were kindly provided by Nurel S.A. (Zaragoza, Spain).
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