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Pierce centrifuge column

Manufactured by Thermo Fisher Scientific
Sourced in Germany, United States, United Kingdom

Pierce centrifuge columns are laboratory equipment designed for the separation and purification of biological samples. They facilitate the removal of unwanted materials from solutions through a centrifugation process. The core function of these columns is to enable efficient sample preparation and purification for various analytical and research applications.

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21 protocols using pierce centrifuge column

1

Purification of Histidine-Tagged Proteins

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Large 250 mL cultures were grown to an OD600 of 0.6 in Miller LB supplemented with 0.1 mg/mL ampicillin before initiating cold-shock on ice for 1 h. Cultures were then induced with a final concentration of 1 mM IPTG, followed by growth at 15 °C for 48 h. The cells were collected by centrifugation at 4000 × g and 4 °C for 20 min and resuspended in a lysis buffer of 50 mM sodium phosphate pH 8.0, 300 mM sodium chloride, 10 mM imidazole, and 0.05% (vol.) polyoxyethylene (20) sorbitan monolaurate (Tween-20). The cells were lysed, following which the insoluble material was removed by centrifugation at 17,000 × g and 4 °C for 20 min, and the supernatant was filtered by syringe through a 0.22 μm filter. The filtered crude protein was then incubated with 500 μL of Ni–NTA agarose (Qiagen, Valencia, California) per culture at 4 °C for 2 h, collected on a Pierce Centrifuge Column (Life Technologies, Grand Island, New York) by gravity flow, and washed with 2 column volumes of a wash buffer of 50 mM sodium phosphate pH 8.0, 300 mM sodium chloride, and 20 mM imidazole. The protein was then eluted in 500 μL increments with a stepwise gradient of imidazole in 50 mM sodium phosphate pH 8.0, 300 mM sodium chloride (four column volumes were collected at each stepped concentration).
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2

Preparation of Fluorescent Lipid Vesicles

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The appropriate lipids for each experiment were dissolved in CHCl3, together with 0.02 mol-% Rhodamine-PE (Rh-PE). The solvent was removed, and the dried lipids were hydrated with 10 mM HEPES buffer (pH = 7.5) containing 12.5 mM ANTS, 45 mM DPX, and 50 mM NaCl. This stock suspension was subjected to 10 freeze-thaw cycles and then frozen. Appropriate aliquots of the stock lipid suspension were unfrozen each day and extruded (41 times) through polycarbonate membranes with 100 nm pore size, and stored at room temperature overnight. The fluorophore and quencher outside the vesicles were removed by size exclusion chromatography using spin-columns (Pierce centrifuge column, 2 ml, Life Technologies GmbH, Darmstadt, Germany) filled with Sephacryl 100-HR (2 min, 1500 × g). For elution, a 10 mM HEPES buffer (pH 7.5) was used, containing 155 mM NaCl to balance the osmolarity. After extrusion and removal of the external dye and quencher, the lipid concentration usually decreases. Therefore, before each set of measurements a rhodamine spectrum was recorded to determine the actual concentration of lipids, which was referenced to a spectrum taken of vesicles made by sonification without any subsequent treatment.
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3

Biotinylated DNA Template Immobilization

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For this study, commercial agarose beads (30-165 μm diameter), coated with either streptavidin or neutravidin (Thermo Fisher Scientific Inc., Rockford, IL), were used as the solid phase support. In our hands, the neutravidin-coated agarose beads appeared to have a better retention of the biotinylated DNA templates and, therefore, were used as the solid phase support in most cases. The ds-DNA template (0.8 μmoles) was incubated with neutravidin-coated agarose beads (8 mL) in buffer A for ~3 days at 4 °C. The bead-attached templates were washed by repeated rinsing and passing through a Pierce Centrifuge Column with a ~30 μm average pore size (Thermo, Rockford, IL) to remove non-bound DNA templates, and were stored at 4 °C. Approximately 80% of the DNA template was attached to the beads based on UV-absorbance detection. The bead-attached templates were stable for an extended period of time, and were reused for multiple rounds of synthesis for this study.
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4

Biotinylated DNA Template Immobilization

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For this study, commercial agarose beads (30-165 μm diameter), coated with either streptavidin or neutravidin (Thermo Fisher Scientific Inc., Rockford, IL), were used as the solid phase support. In our hands, the neutravidin-coated agarose beads appeared to have a better retention of the biotinylated DNA templates and, therefore, were used as the solid phase support in most cases. The ds-DNA template (0.8 μmoles) was incubated with neutravidin-coated agarose beads (8 mL) in buffer A for ~3 days at 4 °C. The bead-attached templates were washed by repeated rinsing and passing through a Pierce Centrifuge Column with a ~30 μm average pore size (Thermo, Rockford, IL) to remove non-bound DNA templates, and were stored at 4 °C. Approximately 80% of the DNA template was attached to the beads based on UV-absorbance detection. The bead-attached templates were stable for an extended period of time, and were reused for multiple rounds of synthesis for this study.
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5

Tandem Immunoprecipitation and Mass Spectrometry

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For mass spectrometry, cytoplasmic extracts were obtained as aforementioned. Tandem immunoprecipitation (Flag and HA) was carried out using 10 mg of cytoplasmic extract. Flag IP was performed using EZview™ Red ANTI-Flag® M2 Affinity gel (SigmaAldrich, F2426), following the manufacturer’s instructions. Washes were carried out 3 times as aforementioned and protein complexes were eluted by competition performing 2 consecutive elutions using Flag elution buffer (250 ng/μl FLAG® Peptide (SigmaAldrich, F3290), diluted in IP buffer) incubating for 1 h at 4°C on a rotating wheel. HA IP was performed using the elutions obtained from the first IP incubated with Pierce™ Anti-HA Agarose beads (ThermoScientific, 26181) for 2 h at 4°C on a rotating wheel. Washes were carried out 5 times as aforementioned and elutions were performed using HA elution buffer (400 ng/ μl HA peptide (ThermoScientific, 26184), diluted in IP buffer) for 1 h at 4°C on a rotating wheel. Following elution, beads were removed using Pierce™ Centrifuge Columns (ThermoScientific, 11894131), as specified by manufacturer’s instructions. Silver-staining was performed according to the manufacturer’s instructions (Silverquest, Invitrogen). Mass spectrometry was performed at Taplin facility, Harvard University, Boston, MA.
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6

Pull-Down Assay for Protein-Nucleotide Interactions

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6 mg of each extract were mixed with 10 μL of nucleotide-loaded RAB-GST baits in a total volume of 0.4 mL in 0.8 mL Pierce centrifuge columns (ThermoFisher #89869) and the mixtures were incubated for 2 h at 4°C in a rotating wheel. GST-Sepharose beads were collected by low speed centrifugation, washed four times with 0.7 mL of ‘medium KCl buffer’ (25 mM HEPES pH 7.5, 175 mM KCl, 5mM MgCl2, 1 mM DTT and 0.1% Triton X-100) before bound material was eluted with 20 μL of Laemmli loading buffer. 15 μL were run in 7.5% polyacrylamide gels that were analyzed by α-HA western blotting and 2μL were run in a 10% polyacrylamide gel for Coomassie staining of the baits.
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7

Proteomic Analysis of Extracellular Vesicles

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Reagents were purchased from Sigma (St. Louis, MO) unless otherwise specified. The UltraLink hydrazide resin, Zeba spin desalting columns, Pierce centrifuge columns, radioimmuno-precipitation assay (RIPA) buffer, and chemiluminescence substrate kit were from Thermo Scientific (Rockford, IL). Sequencing-grade trypsin was from Promega (Madison, WI). The YM-30 kDa and YM-50 kDa MWCO centrifugal filters and C18 ZipTips were from Millipore (Billerica, MA). The 200 mesh Formvar/carbon-coated grid was from Electron Microscopy Sciences (Hatfield, PA). The pooled normal human serum sample was obtained from Innovative Research (Novi, MI). The monoclonal anti-CD9 antibody (no. ab92726) and horseradish peroxidase (HRP) conjugated secondary antibody were from Abcam (Cambridge, MA). The 4–20% SDS-PAGE gel was from Bio-Rad (Hercules, CA), and the ProteoSilver Plus Silver Stain Kit was from Sigma. The phosphate-buffered saline (PBS) buffer and 1 M NaCl were filtered with a 0.22 μm filter prior to use.
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8

TriKE Protein Purification Protocol

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TriKE plasmids were transfected into Expi293 cells (Thermo Fisher, Waltham, MA) according to the manufacturer’s protocol and protein was purified using HisPur Cobalt Resin (Thermo Fisher) and Pierce centrifuge columns (Thermo Fisher). Protein was eluted using 250mM imidazole solution and desalted using Prepacked disposable PD-10 columns (GE Healthcare, Chicago, IL). Purity and size (57KDa) were determined by running sodium dodecyl sulfate polyacrylamide gel electrophoresis using Simply Blue Life Stain (Invitrogen, Carlsbad, CA).
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9

Immunoblot Assay Protocol for MEF Lysis

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For immunoblot assays, MEFs were lysed on ice with 150 µl of 1 x Radio-immune precipitation assay (RIPA) buffer [20 mM Tris–HCl pH 7.4, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 10% glycerol, 0.1% SDS and 0.5% deoxycholate, 5 mM NaF, 10 mM NaPPi, 1 mM Na3VO4] supplemented with 1 mM phenylmethylsulfonyl fluoride (PMSF) and 1 x cOmplete protease inhibitors (Roche Biochemicals). WCLs were clarified by centrifugation at 17,000 × g for 1 min through Pierce centrifuge columns (Thermo Fisher Scientific) before protein concentration was assessed by bicinchoninic acid assay (BCA; Thermo Fisher Scientific; 23227). Sample protein content was then normalised, and diluted with 4× reducing SDS-PAGE sample loading buffer [1.25% SDS, 12.5% glycerol, 62.5 mM Tris-HCl pH 6.8, 0.005% bromophenol blue, 50 mM dithiothreitol], then heated to 95 °C for 10 min.
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10

IgG Reduction and Purification

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An IgG solution containing 2 mM dithiothreitol (DTT, ≥99.5%, CAS No. 3483-12-3; Sigma-Aldrich) was prepared by adding 20 µL of a 1 M DTT stock solution to 1 mL of IgG (I5381, Sigma-Aldrich) and incubated for 30 min at room temperature without further mixing to minimize the reoxidation of cysteine to cystine. The reduced IgG was then passed through a filtration column (Pierce™ Centrifuge Columns, Thermo Fisher Scientific) pre-equilibrated with an exchange buffer (50 mM MES and 2 mM EDTA, pH 6.0).
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