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11 protocols using ab55152

1

Protein Extraction and Western Blot Analysis

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Total protein was extracted from cultured cells and quantified using Trizol reagent (Invitrogen) following the protocols. Equal amounts of protein from different cells were separated by 10% SDS-PAGE and transferred to a nitrocellulose membrane (Bio-Rad, Hercules, CA). The membrane was blocked with 5% non-fat milk and incubated with antibodies against MHC-ІІ (ab55152, Abcam), IL-1β (#12242, CST), CD206 (ab64693, Abcam), Arg-1 (#9819, CST), GAPDH (ab8245, Abcam), CEBPA (ab40764, Abcam), and β-actin (ab8245, Abcam) at the concentration of 1:1000 at 4°C overnight. The blots were then incubated with horseradish peroxidase–conjugated secondary antibodies in blocking buffer at room temperature for 2 h. The signal was detected using ECL system (Amersham Pharmacia) and quantified by scanning densitometry and computer-assisted image analyzer.
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2

Evaluating Adipocyte Protein Expression

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For the evaluation of specific proteins, cytoplasmic protein extracts from the adipocytes at equal protein concentration were denatured and then electro-transferred onto nitrocellulose membranes. Membranes were incubated with the following primary antibodies in PBS-Tween 20 containing 5% milk: mouse anti-human CD1d (1:500 diluted, BioLegend 350302), mouse anti-human MHC class II (1:500 diluted, abcam ab55152), mouse anti-human UBC9 (1:1,000 diluted, BD 617048). After overnight incubation with the primary antibodies, immunoblots were incubated with the following secondary antibodies for 3 h at room temperature: goat polyclonal anti-mouse IgG HRP-conjugated (1:50,000 diluted, Jackson ImmunoResearch Labs 115-035-003). Membranes were developed by enzyme chemiluminescence and exposed to CL-XPosure Film (Pierce). Films were scanned and analyzed using the AlphaImager Enhanced Resolution Gel Documentation & Analysis System (Alpha Innotech) and images were quantitated using the AlphaEaseFC 32-bit software.
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3

Immunofluorescence Staining of Cultured Cells

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Cells were fixed using 4% paraformaldehyde (Sigma, 158127) in 0.1 M PBS, pH 7.4 (Corning, 21-040-CV) for 30 min. After three washes in cold PBS, cells were permeabilized and blocked for 1 h at room temperature (RT) using 0.1% Triton X-100 (Thermo Fisher Scientific, 28313) and 4% normal donkey serum (Jackson Immuno Research, 017-000-121) in PBS. Primary antibodies were added in the presence of blocking buffer ON at 4 °C. Secondary antibodies (1:500) were added after three PBS washes in blocking buffer at RT for 1 h. The following primary antibodies were used for the immunofluorescence studies: rabbit anti-DARPP-32 (Santa Cruz, sc-271111, 1:100), rabbit anti-MAP2 (Millipore, AB5622, 1:100), rabbit anti-Nestin (Abcam, ab92391, 1:00), mouse anti-MHC-class-II (Abcam, ab55152, 1:100), rabbit anti-Cleaved Caspase-3 (CellSignal, 9661, 1:100), and mouse anti-HTT (Millipore, MAB2166, 1:100). The secondary antibodies were donkey anti-rabbit, anti-mouse IgG conjugated with Alexa-546 (Invitrogen, A10040 and A10036) or Alexa-647 (Invitrogen, A-31573 and A-31571). Images were acquired using a Biotek Cytation 5 microscope and were prepared using Fiji software (ImageJ, https://fiji.sc/).
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4

Telomere Vesicle Uptake and T Cell Analysis

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T cells (106) were cultured for 48h with 5,000 telomere vesicles or 5,000 telomere depleted vesicles. In some experiments, blocking antibodies to MHC class II (1μg/mL; ab55152 Abcam) were added to the vesicle preparations prior to transfer into T cells, as indicated. T cell nuclear extracts were derived using nuclear extract lysis buffer from Pierce™ Chromatin Prep Modulen 26158) then analysed by qPCR using telomere specific and standard primers (8918, ScienceCell research Laboratories) using standard 6800 Roche Analyzer.
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5

Immunofluorescence Staining of MHC Proteins

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The cells were fixed in 4% paraformaldehyde for 15 min at room temperature and permeabilized with 0.1% triton X-100 in PBS for 15 min. After washing with PBS buffer three times, cells were blocked in 1% BSA in TBST solution for 1 h and then incubated with diluted MHC primary antibody (Rabbit anti-MHC class I, ab281901, Abcam, 1:100, and mouse anti-MHC class II, ab55152, Abcam, 1:100) at 4˚C for overnight. After washing with PBS, cells were incubated second antibodies conjugated with Alexa Fluor 488 and 594. (Goat anti rabbit Alexa Fluor 488, ab150081, 1:500 and Goat anti-mouse Alexa Fluor 594, A-11032, Thermo Fisher Scientific, 1:200) for 1 h at room temperature. 1 µg/ml of Hoechst 33342 was used for the staining of nuclei acid. All images were taken using a fluorescent microscope (Nikon Eclipse Ts2) equipped with 10× objective lens (Plan Fluor, Nikon) and image software (NIS element version 4.51.00, Nikon). For the image analysis, 2–3 randomly selected fields were used from three independent experiments. Evaluation of fluorescence intensity was carried out with ImageJ FIJI software55 (link).
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6

Immunohistochemistry of Cardiomyocytes

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For immunohistochemistry, the Day 8 cells were fixed with 4% formaldehyde (ThermoFisher Scientific) for 24 h and washed with PBS. Cells were permeabilized in PBS containing 0.25% Triton X-100 for 10 min. The anti-cTnT antibody (Thermo Fisher Scientific, Cat. MS-295) and anti-myosin heavy chain class II (Abcam Cat. ab55152) antibodies were used.
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7

Langerhans Cell Phenotype and Surface Marker Analysis

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LCs were separated from the PBMCs of patients in the different groups as previously described [24 (link)]. Briefly, PBMCs were incubated in RPMI medium supplemented with 1000 U/ml GM-CSF, 2 mM L-glutamine, 10 mg of streptomycin, 10% foetal bovine serum (FBS), 1000 U/ml IL-4, and 10 μg/ml TGF-β for 7 days. The LC phenotype (CD1a + Langerin + CD14-) was confirmed by flow cytometry.
Surface marker expression was analysed by flow cytometry. Briefly, 106 LCs were harvested, washed, stained with antibodies against MHC I (ab134189, Abcam), MHC II (ab55152, Abcam), CD80 (ab134120, Abcam), CD83 (ab275021, Abcam), CD86 (ab239075, Abcam), and CD40 (ab224639, Abcam Inc., Cambridge, UK) or with isotype controls for 1 h, and washed with FACS buffer. All the flow cytometric analyses were performed using an FC500 flow cytometer. Then, we treated the LCs with 20 μM LY294002 (EMD Biosciences), a potent specific inhibitor of PI3K, and analysed surface marker expression again. The flow cytometric data were quantified as the median fluorescence intensity (MFI) and analysed using FlowJo software (FlowJo, LLC).
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8

Immunological Assay Protocol for Cell Cultures

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Apocynin, SP600125, c‐Jun peptide, IT901, and pristmerin were purchased from Tocris Bioscience (Abingdon, UK). Ascorbic acid, collagenase IV, DMSO, pentobarbitone, PHA, and TNF‐α were bought from Sigma‐Aldrich (St. Louis, MO, USA) and butorPHAnol from Cayman (Ann Arbor, MI, USA). Amoxicillin was supplied by RuiYang (Shandong, PRC). Recombinant human IFN‐γ and TGF‐β1 were bought from PeproTech (Rocky Hill, NJ, USA). Dynabead magnetic beads M450 were bought from Invitrogen. Anti‐rabbit (RRID:AB_2313567) and anti‐mouse (RRID:AB_10015289) secondary antibodies were purchased from Jackson ImmunoResearch Laboratories (West Grove, PA, USA). Anti‐rabbit IgG‐FITC (RRID:AB_631744) and anti‐mouse IgG‐FITC (RRID:AB_631735) antibodies were bought from Santa Cruz Biotechnology (Dallas, TX, USA). Anti‐rat MHC I antibody (Abcam ab15681, RRID:AB_302030) detects mouse MHC Class I antigens of d and b haplotype; anti‐rabbit MHC I antibody (Abcam ab110645, RRID:AB_10859600) detects human HLA B; anti‐rat MHC II antibody (Abcam ab23990, RRID:AB_447796) detects I‐A region of the mouse MHC; and anti‐mouse MHC II antibody (Abcam ab55152, RRID:AB_94419) detects human MHC II β chain HLA‐DPB1. The primary antibodies are listed in Table 1.
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9

Western Blot Analysis of Immune Regulators

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Protein was extracted from the cells with RIPA buffer supplemented with 100X protease inhibitor (Thermo) and resolved on SDS-PAGE gels, then transferred to nitrocellulose or PVDF membranes. The primary antibodies against mouse PADI4 (1:1000, Abcam, ab214810), STAT1 (1:1000, CST, 9172), phosphor-STAT1 (Tyr107) (1:1000, CST, 9167), PIAS1 (1:1000, CST, 3350), β-actin (1:1000, CST, 3700), MHC-II (1:1000, Abcam, ab55152 or ab180779), CIITA (1:500, Abcam, ab70060) and HLA-DR (1:1000, Abcam, ab118347) were used. Peroxidase-conjugated secondary antibody (Vector Laboratories) was used and the antigen-antibody reaction was visualized using an enhanced chemiluminescence assay (ECL, BioRad).
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10

Immunofluorescent Staining of Adipose Tissue

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Fresh tissue sections were obtained from the subcutaneous obese AT, they were placed in O.C.T. blocks (Tissue-Tek 4583) and stored at −80°C. Blocks were sectioned at 16 μm thickness and fixed in cold acetone for 10 min. For the staining, the tissue sections were fixed in acetone and washed twice with PBS. The tissue sections were then blocked for 1 h with 5% BSA at room temperature, and incubated with primary anti-CD1d antibody (abcam ab11076), or with primary anti-MHC class II antibody (abcam ab55152), both 1:100 diluted, overnight at 4°C. The next day, the slides were washed with PBS twice for 5 min and incubated with the following secondary antibodies: AF488-conjugated goat anti-mouse IgG (Biolegend 405319) for CD1d detection, and AF647-conjugated goat anti-mouse IgG (ThermoFisher InVitrogen A-21236) for MHC class II detection, both 1:100 diluted, 1 h at room temperature, or with the isotype controls [IgG1 (Biolegend 401402) and IgG2a (Biolegend 401502), respectively]. The slides where then washed 3 times, 3 min each. The cover slides were mounted with ProLong Gold Antifade Mountant and DAPI (4′,6-diamidino-2-phenylindole, ThermoFisher Scientific), which stains the nuclei of immune cells, to visualize the nuclei. Slides were imaged with a Keyence inverted microscope.
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