The largest database of trusted experimental protocols

43 protocols using prolong diamond with dapi

1

Visualizing Osteoblast Morphology and Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunocytochemistry was performed to visualize HObs morphology and protein expression. Cells were permeabilized with 0.1% Triton-X 100 in phosphate-buffered saline (PBS) for 10 minutes, then rinsed 3 times with PBS, and blocked for 30 minutes with 1% bovine serum albumin (BSA) in PBST (0.1% Tween 20 in PBS). The cells then were incubated at 4 °C overnight with a primary antibody for osteopontin (abcam, ab69498) at a 1:200 dilution in 1% BSA in PBST. The cells then were rinsed 3 times with 1% BSA in PBST and were incubated for 1 hour at room-temperature in the dark with a secondary antibody (abcam, ab150080) at a 1:200 dilution in 1% BSA in PBST. Following incubation, the cells were rinsed 4 times with 1% BSA in PBST and were mounted using ProLong Diamond with DAPI (Invitrogen). In a similar manner, after the permeabilization step to stain for cytoskeletal F-actin, the cells were incubated with Texas-Red phalloidin (Invitrogen) following the manufacturer’s instructions and were mounted using ProLong Diamond with DAPI (Invitrogen). Fluorescence microscopy was conducted using an epifluorescence Nikon TE-2000U inverted microscopy.
+ Open protocol
+ Expand
2

Immunocytochemistry of Neuronal Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were washed for 5 minutes in PBS and then fixed with 4% (w/v) paraformaldehyde (Thermo Fisher Scientific, 28908) for 15 minutes, followed by three washes, 5 minutes each, in PbTr (PBS with 0.125% Triton-X 100; Millipore Sigma, 9400). Following an additional 10 minutes permeabilization with PbTr, the cells were blocked in PbTr with 5% normal donkey serum (Abcam, ab7475) for 45 minutes. Primary antibodies (ChAT, 1:100, EMD Milipore AB144P; Tuj1, 1:1000, BioLegend 801202) were diluted in blocking buffer and cells were incubated overnight at 4 °C in a humidified chamber. After three 5 minute washes with PbTr, cells were incubated in the dark for an hour with secondary antibodies (Alexa Fluor secondary antibodies, ThermoFisher Scientific, at a 1:1000 dilution). Cells were finally washed three times with PbTr, and the slides were mounted in Prolong Diamond with DAPI (Life Technologies, P36962). Slides were mounted overnight at room temperature prior to imaging.
+ Open protocol
+ Expand
3

Immunofluorescence Protocol for Cell Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed in 4% paraformaldehyde in PBS for 15 min, permeabilized with 0.2% Triton-X 100 in PBS for 5 min and blocked with 10% BSA, 5% goat serum and 50 mM glycine in PBS for 30 min. Primary antibody incubation for 2 h at room temperature was followed by secondary incubation with an Alexa Fluor-conjugated secondary antibody (AF-488 for green channels and AF-555 for red channels, Life Technologies). Cells were mounted with ProLong Diamond with DAPI (Life Technologies) and imaged with a Zeiss Axiovert 200 microscope or Zeiss Observer Z.1 microscope, unless otherwise indicated.
+ Open protocol
+ Expand
4

Immunofluorescence Staining of Ocy454 Cells and Bone Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ocy454 cells seeded and grown on glass coverslips were fixed and permeabilized as described (67 (link)). For histological sections of bone, decalcified, paraffin-embedded sections were processed as described (68 (link)). Coverslips were incubated in SuperBlock PBS (Life Technologies) for 1 hour before the addition of primary antibodies. Primary antibodies were diluted in SuperBlock PBS and added to the coverslips for an overnight incubation at 4°C. Secondary antibodies were diluted in SuperBlock PBS and incubated at room temperature for 6 hours. Coverslips were mounted using ProLong Diamond with DAPI (Life Technologies). The antibodies used were α-tubulin (Sigma, T9026), detyrosinated tubulin (Abcam, ab48389), and TRPV4 (Abcam, ab39260). Goat anti-mouse Alexa Fluor 488 and 647 and goat anti-rabbit Alexa Fluor 488 and 568 were purchased from Life Technologies. Actin was stained using phalloidin–tetramethyl rhodamine isothiocyanate (Molecular Probes). Slides were imaged as described (69 (link)).
+ Open protocol
+ Expand
5

Confocal Analysis of EMT Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
For confocal microscopic analysis, the siVASH2 and siControl DISS transfected cells, or shVASH2 and sh‐control DISS cells, were seeded on coverslips in a 12‐well plate at a density of 12 × 104 cells and cultured overnight at 37°C in DMEM with 10% FBS. The next cells were starved for 4 h in DMEM containing 0.5% FBS, followed by treatment with or without 10 ng/mL TGF‐β1 for 72 h. Cells were then fixed with ice‐cold mixture of methanol‐acetone (1:1) for 30 s, blocked with 1% BSA, and incubated with anti‐E‐cadherin (1:200 dilution) and anti‐SM22α (1:1000 dilution) antibodies overnight at 4°C. The next day, cells were incubated with secondary antibodies conjugated either with Alexa Fluor 488 (1:500 dilution) or Alexa Fluor 594 (1:500 dilution) for 1 h at room temperature to visualize stained molecules. After extensive washing, cells were mounted in ProLong Diamond with DAPI (Life Technologies). The images were captured under a confocal microscope (FV10i; Olympus, Tokyo, Japan).
+ Open protocol
+ Expand
6

Immunohistochemical Profiling of Mouse Brain

Check if the same lab product or an alternative is used in the 5 most similar protocols
For histology, the mice were euthanized (sodium pentobarbital, Henry Schein, 100 mg/kg, i.p.), and perfused transcardially (4% paraformaldehyde in 0.1 M phosphate buffer, pH 7.4). Cryostat sections were cut at 12 μm, mounted and immunostained on Superfrost Plus glass slides. Incubations were overnight at room temperature in primary antibodies diluted in 0.1 M sodium phosphate buffered saline containing 10% normal goat serum and 1% Triton-X 100. The following primary antibodies were used (see Table S1): chicken anti-GFP (1:1000), mouse anti-mCherry (1:1000), rabbit anti-mCherry (1:1000), chicken anti-mCherry (1:1000), rabbit anti-NLGN2 (1:1000), rabbit anti-parvalbumin (1:1000), guinea pig anti-VGAT (1:500), mouse anti-vGlut (1:500), and mouse anti-gephyrin (1:1000). Detection was performed with secondary antibodies (Life Technologies) and sections were mounted in Prolong Diamond with DAPI (Life Technologies).
+ Open protocol
+ Expand
7

Immunofluorescence Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed in 4% paraformaldehyde (PFA) in PBS for 15 minutes, permeabilized with 0.2% Triton-X 100 in PBS for 5 minutes, and blocked with 10% BSA, 5% goat serum and 50mM glycine in PBS for 30 minutes. Primary antibody incubation for 2h at room temperature was followed by secondary incubation with an AlexaFluor-conjugated secondary antibody (Life Technologies, AF-488 for green channels, AF-555 for red channels). Cells were mounted with ProLong Diamond with DAPI (Life Technologies) and imaged with a Zeiss Axiovert 200 microscope or Zeiss Observer Z.1 microscope, unless otherwise indicated.
+ Open protocol
+ Expand
8

Visualizing NRG1 Signaling in Breast Cancer Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human breast cancer MCF-7 cells (5 × 104 cells per well; JCRB0134, JCRB Cell Bank, National Institutes of Biomedical Innovation, Health and Nutrition, Osaka, Japan) were plated in 24-well plates in high-glucose DMEM with l-glutamine (Sigma-Aldrich, St. Louis, MO, USA) supplemented with 10% fetal bovine serum, 100 U ml−1 penicillin and 100 μg ml−1 streptomycin at 37 °C in 5% CO2. The culture medium was changed to Opti-MEM (Life Technologies, Carlsbad, CA, USA) 24 h after seeding. An additional 24 h later, cells were treated with Fc protein or mouse mNRG1-Fc with or without 10 mg ml−1 heparin (Sigma-Aldrich) or neuropsin (10 mU ml−1) in the culture medium for 60 min, washed and then incubated with an Alexa 488-conjugated donkey anti-rabbit IgG in fresh Opti-MEM (A21206; 1:1000, Molecular Probes, Eugene, OR, USA) for 1.5 h at room temperature. The cells were mounted in ProLong Diamond with DAPI (Life Technologies). Images were captured using a Zeiss LSM710 confocal laser-scanning microscope (Carl Zeiss MicroImaging, Jena, Germany). Fluorescence intensity was measured with ImageJ software (version 1.48; National Institutes of Health, Bethesda, MD, USA).
+ Open protocol
+ Expand
9

Quantifying Nuclear Fragmentation in CHO Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Nuclear fragmentation assays were performed as described previously23 (link),31 (link). In brief, CHO cells were plated on coverslips in 24-well dishes at a density of 2.5 × 104 (link) cells per well. After overnight incubation, cells were transfected with the plasmids indicated. Eighteen hours post-transfection, the cells were incubated with staurosporine (2 mg/ml) for 4 h at 37 °C and 5% CO2. The cells were fixed with 4% paraformaldehyde (Alfa Aeser) in PBS (Biochrom) for 20 min at room temperature, permeabilized with ice-cold methanol for 30 s, quenched with 50 mM NH4Cl (Roth) in PBS for 15 min at room temperature. The cells were mounted using ProLong Diamond with DAPI (ThermoFisher) to visualize the nucleus.
+ Open protocol
+ Expand
10

Brain Tissue Immunostaining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adult mice were transcardially perfused with 20 mL of room temperature phosphate buffered saline (PBS, pH 7.4) followed by 20 mL of chilled 4% paraformaldehyde (pH 7.4). The brainstem was then removed from the animal and 150 um slices were made using a Zeiss VT100S vibratome. Slices were then incubated in a 0.5% Triton-X/PBS solution for 45 min to permeabilize the tissue. The slices remained in a 0.1% Triton-X/10% Fetal Bovine Serum (FBS, ThermoFisher)/PBS solution for a 12 hr primary antibody incubation of anti-mouse alpha smooth muscle actin (Sigma). The tissue was then washed three times in 0.1% Triton-X/10% FBS/PBS solution; the secondary antibody was incubated with the tissue after the third wash for 2 hr (donkey anti-mouse Alexa Fluor 647, ThermoFisher). The tissue was then washed three times in PBS before mounting on precleaned cover slides with Prolong Diamond with DAPI (ThermoFisher). Imaging of brain slices was achieved with a Leica SP8 confocal microscope.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!