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13 protocols using abt 737

1

GFP-Bax Expression and Apoptosis Imaging

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hBax-C3-EGFP (Addgene plasmid 19741) (Nechushtan et al., 1999 (link)) was used for transient GFP-Bax expression in HeLa cells. Transient transfection was performed using X-tremeGENE 9 (Roche 06365787001) at a ratio of 3 µL of transfection reagent to 1 µg DNA. MitoTracker Deep Red (Thermo 22426) was used for cellular staining at 20 nM. Drug treatments used were ABT-737 at 10 µM (Cayman 11501) and Q-VD-OPh at 10 µM (APExBIO A1901).
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2

Evaluation of Liver Cancer Cell Lines and Compounds

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Human liver cancer cell lines Hep3B, PLC/PRF/5, HepG2, SNU-182, SNU-387, SNU-398, SNU-423, SNU-449, and SNU-475, HLE and HLF were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). The Huh-7 human liver cancer cell line was obtained from the Japanese Cancer Research Resource Bank (JCRB, Ibaraki, Japan). These cell lines were cultured in RPMI-1640 medium or Dulbecco’s modified eagle medium (DMEM) supplemented with 10% fetal calf serum and antibiotics. All cells were confirmed to be free from pathogens and mycoplasma. Regorafenib was provided by Bayer AG (Leverkusen, Germany). Regorafenib was dissolved in the mixture of PEG400, propylene glycol and pluronic F68. ABT-737 and Verteporfin were purchased from Cayman Chemical (Ann Arbor, MI, USA). These compounds were dissolved in dimethyl sulfoxide (DMSO) to prepare stock solutions and diluted in cell growth medium for assays.
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3

Apoptosis Pathway Antibody Panel

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Antibodies used include anti-Bid (Luo et al.12 (link)), anti-Bim (Santa Cruz, Biotechnology, Inc, Dallas, TX, USA, Sc-11425, Calbiochem, San Diego, CA, USA, #202000), anti-Puma (Santa Cruz, Sc-28226, Pro-Sci, Inc, Poway, CA, USA, 3041), anti-Bad (Santa Cruz, Sc-8044), anti-Noxa (Santa Cruz, Sc-56169 Novus Biologicals, Littleton, CO, USA, IMG-349A), anti-Bax (Santa Cruz, Sc-493), anti-Bak (Santa Cruz, Sc-832, Cell Signaling Technology, Danvers, MA, USA, #3814), anti-Bcl-2 (Santa Cruz, Sc-509), anti-Bcl-xL (Santa Cruz, Sc-8392), anti-Mcl-1 (Santa Cruz, Sc-819), anti-β-actin (Sigma-Aldrich, St. Louis, MO, USA, A5441), anti-PARP (Cell Signaling Technologies, #9524), anti-GFP (Santa Cruz, Sc-459), and anti-p53 (Santa Cruz, Sc-393). z-VAD(OMe)-FMK was purchased from MP Biomedicals (Santa Ana, CA, USA). Thapsigargin was purchased from Adipogen. Corp (San Diego, CA, USA) ABT-737 was purchased from Cayman Chemical (Ann Arbor, MI, USA). Human recombinant TRAIL was made as previously described.61 (link)
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4

Evaluating BAX-mediated Cell Viability

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Bax−/−Bak−/− MEFs and those reconstituted with the indicated BAX proteins were cultured as described above, plated in 96-well plates (1.5 × 103 cells per well), and allowed to adhere for 24 h. The cells were then treated with 10 μM ABT-737 (Cayman Chemical) and the indicated concentration of S63845 (SelleckChem), or vehicle (0.05% and 0.1% DMSO, respectively) for 24 h. Cell viability was measured by CellTiter-Glo assay (Promega) with luminescence read on a Spectramax M5 microplate reader equipped with SoftMax Pro 7.0.2 software.
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5

Recombinant TRAIL and Caspase Inhibitors

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TRAIL was commercially supplied (Enzo Life Sciences, Farmingdale, NY, USA) or produced from 293T cells as described.45 (link) Briefly, the extracellular portion of human TRAIL (amino acids 95–281) was cloned into pBabe retroviral expression vectors to produce functionally active TRAIL,46 (link) which was quantified by TRAIL ELISA according to the manufacturer’s instructions (Abcam, Cambridge, UK). Caspase inhibitors (BD Pharmingen, San Diego, CA, USA) were as follows: Z-IETD-FMK (caspase-8 inhibitor), Z-VAD-FMK (general caspase inhibitor), Z-FA-FMK (negative control), Z-LEHD-FMK (caspase-9 inhibitor) and Ac-DEVD-CHO (caspase-3/7 inhibitor). Bcl-2, Bcl-xL inhibitors ABT-263 and ABT-737 were purchased from Cayman Chemicals (Ann Arbor, MI, USA)
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6

BAX-mediated cell viability assay

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Bax−/−Bak−/− MEFs reconstituted with wild-type or C126A mutant BAX were seeded at 5,000 cells per well in a white, flat-bottomed 96-well plate (Costar) and grown overnight, followed by the indicated co-treatments with ABT-737 (Cayman Chemical) and S63845 (MedChemExpress), or vehicle (0.1% or 0.05% DMSO, respectively). Viability was measured after 24 h using Cell-TiterGlo in accordance with the manufacturer’s protocol and expressed as a fraction of the corresponding vehicle treatment.
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7

Adipocyte Differentiation and Metabolic Regulation

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CL316243, isoproterenol, resveratrol, rosiglitazone, amlexanox, zardaverine, H89, IBMX, and thiazolyl blue tetrazolium blue (MTT) were from Sigma. [1-14C] palmitic acid was from Moravek Biochemicals. 2′3′-cGAMP and 2′3′-cGAMP control were from Invivogen. ABT-737, Q-VD-OPh and nigericin were from Cayman Chemical. Digitonin was from EMD Millipore. Antibodies to UCP1 (Cat# Ab23841), C/EBPβ (Cat# Ab32358), ChREBP (Cat #157153), Prdm16 (Cat# ab106410), and ERP57 (Cat# Ab10287) were obtained from Abcam; antibodies to cGAS (Cat# 31659), p-TBK1 (Cat# 5483), TBK1 (Cat# 3013), p-IRF3 (Cat# 4947), IRF3 (Cat# 4302), STING (Cat# 13647), PKA Substrates phosphorylation (Cat# 9621), p-HSL (Cat# 4139), HSL (Cat# 4107), PPARγ (Cat# 2443), ATGL (Cat# 2439), FASN (Cat# 3180), p-ACC (Cat# 3661), ACC (Cat# 3662), and SCD1 (Cat# 2794) were all from Cell Signaling; an antibody to PGC1α (Cat# ST1204) was from EMD Millipore; an antibody to TNFα (Cat# CG1601) was from Cell Applications, Inc; an antibody to Complex IV (Cat# A6403) was from Molecular Probes; Lamin A antibody (Cat# 3267-100) was from BioVision; antibodies to beta-tubulin and myc were made from monoclonal antibody-producing cell lines obtained from ATCC; A polyclonal anti-DsbA-L antibody is homemade from rabbit and also available in EMD Millipore (Cat# ABS1644).
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8

Synthesis and Characterization of SACLAC Lipid

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SACLAC N-[(2S,3R)-1,3-dihydroxyoctadecan-2-yl]2-chloroacetamide was synthesized as previously described (IQAC-CSIC) (35 ). The structure was validated using mass spectrometry. 2-Hydroxypropyl β-cyclodextrin was obtained from Acros Organics (#297561000). ABT-737 and ceramides mixture were obtained from Cayman Chemicals (#11501 and #22853, respectively). The ceramide mixture contained trace amount of C16 ceramide and varying amounts of longer chain and 2-hydroxy ceramides with C24 species being most abundant. C16 was purchased from Avanti Polar Lipids (#860516). All ceramides were dissolved in methanol with 2% dodecane. LCL204 was synthesized according to previously published methods (36 (link)). RBM14C12 substrate for AC activity assays was provided by Gemma Fabrias and Antonio Delgado (IQAC-CSIC).
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9

ABT-737 Subcutaneous Injection Protocol

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Mice were subcutaneously injected twice (on days P10 and P12) with ABT-737 (Cayman Chemical) or vehicle control at a dose of 75 mg kg−1.
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10

Cytotoxicity Assay for Cervical Cancer Cell Lines

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Caski and SiHa cervical cancer cell lines were obtained from the American Type Tissue Culture Collection. The Caski cells were cultured in Roswell Park Memorial Institute 1640 medium supplemented with 10% heat-inactivated fetal bovine serum (FBS), 0.2% sodium bicarbonate, 2 mM L-glutamine, 100 U/mL penicillin, and 100 μg/mL streptomycin. The SiHa cells were cultured in Dulbecco’s Modified Eagle Medium with 10% FBS, 5.5% sodium bicarbonate, 2 mM L-glutamine, 100 U/mL penicillin, and 100 μg/mL streptomycin. As2O3, 3-methyladenine (3-MA), and chloroquine were purchased from Sigma (St. Louis, MO, USA). ABT-737 was obtained from Cayman (Ann Arbor, MI, USA).
MTT (3-(4,5-dimethylthiazol-2-yl)-25-diphenyltetrazolium bromide) assay (MTT assay). The Caski and SiHa cells (5 × 103 cells/well) were seeded into a 96-well plate with a 100 μL culture medium. The medium was removed after treatment for 48 h, and 100 μL of the medium containing 0.5 mg/mL MTT (Sigma, M 2128) was added. MTT assay was performed as previously described [19 (link)]. The combination index was calculated using the software Compusyn 1.0. [20 (link)].
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