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15 protocols using pm100a

1

Optogenetic Activation of Chrimson Neurons

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We used a high-powered red LED (Red XP-E, 620–630 nm wavelength) and Buckpuck driver (RapidLED, Randolph, Vermont) to stimulate Chrimson expressing neurons. The LED was mounted directly underneath the preparation and light was presented at 0.238 mW/mm2 as measured by a Thorlabs light meter PM100A with light sensor S130C. Flies expressing Chrimson were raised on food containing 0.2 mM all-trans-retinal. mM all-trans-retinal. All-trans retinal was prepared as a stock solution in ethanol (35 mM), and 28 μl of this stock was mixed into approximately 5 ml of rehydrated potato flakes and added to the top of a vial of conventional food. For Figures 6A, 7A and 8A, we varied the red light intensity as a 10 Hz sine wave from 0 to 0.238 mW/mm2. This phasic stimulation should prevent adaptation of the optogenetic tool.
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2

Simulating Sunlight for Camelina sativa

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The leaves of Camelina sativa were placed on a cover slip that was immersed with water. Light from an LED with a green emission that was centered at 530 nm (LXZ1-PM01) was collimated and delivered to the sample to simulate the interference of sunlight in the wavelength range that is analyzed with our macroscope. To match the optical power that is sent to the sample with the real sunlight power, a photodiode power meter (PM100A, Thorlabs, DE) was used to measure the sunlight and the intensity of the LED on the sample. Since the recorded green fluorescent emission is detected after bandpass filtering (ET525/36m, Chroma, USA) in our setup, we applied the same filter to record the irradiance of the direct sunlight in the same green waveband (525 ± 18 nm). We measured 10 mW/cm2 (λ= 525 nm, Δλ = 36 nm). We correspondingly adjusted the power of the green LED to deliver the same power in our experiments. The images of the leaves have been recorded under both darkroom and artificial sunlight conditions at a sampling rate of fs  = 200 Hz by modulating the excitation lights at 2.5 Hz for eight periods.
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3

Optogenetic Activation of C. elegans Neurons

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Worms expressing ChR2 first grew to L1-L2 stage on standard NGM plates. They were then transferred to new NGM plates either with or without (for negative control) all-trans retinal 2 days before experiments. The retinal plates were prepared by spotting each plate (60-mm diameter with 10-ml agar) with 200-µl OP50 containing 2-mM retinal (R2500, Sigma-Aldrich). In most experiments, blue light pulses (2 sec or 5 sec, 470 ± 20 nm) were generated by a Lambda XL light source (Sutter Instrument, Novato, CA, USA) with a 470 ± 20-nm excitation filter (59222, Chroma Technology Corp., Bellows Falls, VT, USA) and SmartShutter® (Sutter Instrument). Light intensity was adjusted by applying the three standard neural density filters (ND4, ND8, ND16) of the Nikon FN1 microscope in various combinations, which resulted in eight different light intensities ranging from 0.01 to 4.38 mW/mm2. The maximal light intensity was used in all experiments except those assessing the effect of light intensity-dependent activation of ASH neurons on AVA membrane potential. Light intensities were measured with an optical power meter (PM100A, Thorlabs, Newton, NJ, USA) equipped with a photodiode power sensor (S121C, Thorlabs). The on-and-off of light stimulation was controlled by NIS-Elements imaging software (version 4.51) through the SmartShutter in the Lambda XL light source.
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4

Laser-based Confocal Microscopy for Uncaging Experiments

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The uncaging procedure was performed by a three-channel Leica TCS SP5 laser-scanning confocal microscope equipped with 458-, 476-, 488-, 514-, 543-, and 633-nm excitation lines, through a plan-apochromatic oil immersion objective × 63/1.4. The images were acquired with the Leica “LAS AF” software package (Leica Microsystems, Germany).
A Ti:Sapphire laser (Chameleon II, Coherent Inc., Santa Clara, CA, USA) was used for two-photon excitation and uncaging, operating with pulses of 100 fs at the repetition frequency of 80 MHz. The laser power was measured at the objective focal point by a power meter (PM100A, Thorlabs Inc., Newton, NJ, USA). Laser stability was checked considering a balance between pulse width and power performances suggesting the utilization of 750 nm. Images in transmitted light were acquired using a 632.5 nm laser source coupled to a photomultiplier tube. For uncaging experiments, the FRAP Wizard Leica was used to set up the bleach points in terms of coordinates, power, and time. An image before and after the uncaging was taken to confirm the absence of relevant cell displacements.
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5

Measuring Spectral Response with a Mercury Lamp

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Action spectra were elicited with six illumination bands filtered from the emission of a mercury lamp (X-Cite exacte, Excelitas Technologies). The mercury lamp was mounted in the epifluorescence port of the microscope and focused with a lens (AC254-250, ThorLABS) placed 250 mm from the objective lens. Broadband light was filtered and reflected into the sample with six filter and dichroic-mirror sets to give rise to the following wavelength bands (in nanometers): 350–390, 395–415, 426–446, 480–520, 543–557, and 568–590. The filters and dichroic mirrors used in each set were:
All filters and mirrors were obtained from Chroma Technology except the first, which was from Semrock.
To ensure that each wavelength band passed the same intensity of light, the power output in each band was measured using a photodiode-based power meter (S120VC and PM100A, Thorlabs) at all input-command levels of the mercury lamp. The highest power achievable in every band, 5.9 mW, was chosen as the irradiation level. The input command to the mercury lamp was then adjusted to the appropriate value before irradiation with each wavelength band.
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6

Endoscopic Fractional Laser for Colon Tumors

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A thulium fibre-based fractional laser system (1927 nm, Lavieen, WONTECH, Daejeon, South Korea) was combined with a multi-channel endoscopy system (Fig. 6A and B). After disassembling the handpiece, the output of the thulium laser (continuous wave mode) was coupled to a multimode fibre (FG200LEA, Thorlabs, Newton, NJ, USA) through a fibre port coupler (PAF-SMA-11D, Thorlabs, Newton, NJ, USA). The core, cladding, and coating diameters of the multimode fibre with 0.22 NA were 200 µm, 220 µm, and 320 µm, respectively. The distal tip of the coupled multimode fibre was inserted into the instrument channel of the endoscope (Fig. 6C). The output laser power was measured using a power meter (PM100A) with an InGaAs detector (S148C, Thorlabs, Newton, NJ, USA).

An endoscopic non-ablative fractional laser (eNAFL) system for the treatment of orthotopic mouse colon tumours. (A) Schematic illustration of the eNAFL system. (B) Images of the endoscope. (C) eNAFL delivering multimode fibre was inserted via the instrument channel of the endoscope. (D) Schematic representation of the experiment. Tumour-bearing mice were divided into the irradiated and control groups. eNAFL (70 mJ/spot) was applied in the irradiated group. Serial tumour volume was measured to estimate the therapeutic efficacy of the eNAFL irradiation for 1 week.

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7

Optogenetic Activation of Thalamocortical Fibers

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For activation of thalamocortical fibers, an extracellular stimulating electrode (concentric bipolar Pt/Ir electrode, 33 G; FHC) was placed in the external capsule in close proximity to visually identified mCherry-expressing fiber bundles. Fibers were activated by short, bipolar electrical pulses (400 μs, <100 μA). Opsins were activated using a 590 nm light emitting diode (LED; M590L2-C2; Thorlabs) delivered through the microscope illumination path which included a custom dichroic in order to reflect the 590 nm activation wavelength while collecting green fluorescence emission. Light power densities were calculated by measuring the light transmitted through the objective using a power meter (Thorlabs PM100A with S146C sensor) and dividing by the illumination area, calculated from the microscope objective field number and magnification25 (link). TTX (1 μM; T-550, Alomone), D-AP5 (25 μM; ab120003; Abcam) and CNQX (10 μM; C-141, Alomone) were bath applied where indicated.
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8

Gene Therapy for Tumor Suppression

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The complex formulations (containing 10 μg pCMV-p53 and 10 μg pKillerRed-mem, 20 μg pCMV-p53, 20 μg pKillerRed-mem or 20 μg pCMV vector of null control) were injected in a volume of 100 μl via tail vein or directly into tumour of mice (athymic BALB/c nude mice with aggressive subcutaneous H1299 cells) by single injections. A yellow laser with 593 nm wavelength was used throughout this study. The light was delivered through an optical fibre and irradiated the tumour surface over a 6-mm-diameter beam spot. Animals were treated with 100 mW cm−2 total irradiance, determined by measuring power (PM100A, Thorlabs, Germany) before and after illumination. The tip of the laser fibre was mounted above the tumour, perpendicular to the animal. This regimen was determined following initial optimization experiments. The laser treatment was administered to the tumour for 20 min every day for 5 days starting from the 2nd day after injection. Tumour size examination was conducted 24 h after the last treatment. Survival rate after tail vein injection was examined.
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9

Photoelectrochemical Properties of LaFeO3 Electrodes

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The photoelectrochemical properties of pristine LFO, LFO/Pt, and LFO/TiO2 electrodes were characterized by means of voltammetric and chronoamperometric measurements. The FTO substrates were masked with a non-transparent epoxy resin to expose the area of ca. 0.5–1 cm2. All the measurements were performed in a 0.1 M NaOH solution in a PTFE cell with a quartz window and separated graphite counter electrode and FTO/LaFeO3 working electrode compartments. HgO/Hg (1 M NaOH) was used as a reference electrode. For the chopped voltammetry and chronoamperometry measurements, a high-power blue LED (ARPL-STAR-3W, λmax = 460 nm) was used as a light source. The sample was illuminated from the front at a light intensity of 45 mW/cm2 at 460 nm (as measured by a calibrated silicone photodiode (S121C, Thorlabs) connected to a power meter (PM100A, Thorlabs)). Potentials are reported with respect to the reversible hydrogen electrode (RHE). Prior to the measurements in 0.1 M NaOH, the solution was deaerated with argon for a minimum of 40 min. For the measurements in O2-saturated 0.1 M NaOH solution, the solution was purged with O2 for 40 min. Electrochemical impedance spectra were recorded under illumination in the frequency range of 100 kHz–10 mHz with a 5 mV alternating potential amplitude.
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10

Optogenetic Activation of Thalamocortical Fibers

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For activation of thalamocortical fibers, an extracellular stimulating electrode (concentric bipolar Pt/Ir electrode, 33 G; FHC) was placed in the external capsule in close proximity to visually identified mCherry-expressing fiber bundles. Fibers were activated by short, bipolar electrical pulses (400 μs, <100 μA). Opsins were activated using a 590 nm light emitting diode (LED; M590L2-C2; Thorlabs) delivered through the microscope illumination path which included a custom dichroic in order to reflect the 590 nm activation wavelength while collecting green fluorescence emission. Light power densities were calculated by measuring the light transmitted through the objective using a power meter (Thorlabs PM100A with S146C sensor) and dividing by the illumination area, calculated from the microscope objective field number and magnification25 (link). TTX (1 μM; T-550, Alomone), D-AP5 (25 μM; ab120003; Abcam) and CNQX (10 μM; C-141, Alomone) were bath applied where indicated.
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