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8 protocols using rat anti endomucin

1

Immunofluorescence Staining of Rat Tissues

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Rat anti-endomucin (Santa Cruz, sc-65495), goat anti-GFP FITC (Abcam, ab6662), rabbit anti-DsRed (Clontech 632496), rat anti-mouse CD102/ICAM2 (BD Biosciences, 553326), mouse anti-Twist1 (Santa Cru z, sc-81417), rat anti-mouse CD31/PECAM-1 (BD pharmingen 553370), rabbit anti-Sox17 (Zhou et al., 2015), mouse anti-smooth muscle actin (Sigma-Aldrich; C6198), rabbit anti-Runx2 (Abeam abl92256), rabbit cleaved caspase-3 (Cell Signaling 9661) and goat anti-EphB4 (R&D systems AF446). Alex Fluor-labeled secondary antibodies were from Invitrogen. See STAR Methods chart.
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2

Murine Pancreatic Tissue Imaging

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Pancreata were fixed in 4% paraformaldehyde and sliced on a vibratome (Leica) (100 µm), or snap-frozen and cryostat-sectioned slices (20 µm) were fixed with 1.5% paraformaldehyde. Immediate fixation was necessary to preserve CFP and GFP fluorescence. Antibody labeling was done as described previously (27 (link)). The antibodies used were as follows: hamster anti-CD11c (N418, eBioscience), rat anti-F4/80 (MCA4976, BioRad), rabbit anti-insulin (Cell Signaling), and rat anti-endomucin (Santa Cruz Biotechnology). Nuclei were labeled using dapi (Sigma). Images were acquired using a Zeiss LSM 780 confocal microscope and analyzed using Imaris (Bitplane), Volocity (Perkin Elmer), and ImageJ (NIH). One to four slices were randomly selected from at least three animals per group. For quantification of infiltrated islets, four slices were randomly selected from pancreas from at least three animals per group, and all islets present were analyzed (>60 islets/mouse). For quantification of T cells–APCs contacts, four slices were randomly selected from at least three animals per group, and all cells present in a minimum of 10 different confocal images (700 μm × 700 μm × 20 μm) were analyzed.
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3

Perinatal Tissue Immunofluorescence Protocol

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Transverse sections through the mid-thoracic to lower abdominal/inguinal region of P0, P3 and P7 pups were fixed in 4% paraformaldehyde for 24h and maintained in 50% ethanol solution. Paraffin embedding, perinatal tissue sectioning and H&E staining was performed by the Molecular Pathology Core Facility at UTSW. Brightfield and fluorescent images were acquired using a Keyence BZ-X710 microscope. Indirect immunofluorescence was performed as previously described 21 (link). Primary antibodies used for immunofluorescence include: guinea pig anti-PERILIPIN 1:1000 (Fitzgerald #20R-PP004), chicken anti-GFP 1:500 (Abcam, ab13970), rabbit anti-MESOTHELIN 1:1000 (LSBio #LS-C407883), rabbit anti-MAC-2 1:500 (Cedarlane #CL8942AP), rabbit anti-EFHD1 1:100 (Sigma #SAB3500392), mouse anti EFHD1 1:100 (Abnova #H00080303-M05), mouse anti-AGT 1:100 (Santa Cruz Biotechnology #sc-374511), rat anti-ENDOMUCIN 1:100 (Santa Cruz Biotechnology #sc-65495).
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4

Pancreatic Immunohistochemistry Protocol

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Pancreas preparation and antibody labeling were as described (33 (link)). Antibodies used were as follows: hamster anti-CD11c (clone N418 1:300, eBioscience); rat anti-F4/80 (clone MCA4976 1:200, BioRad), rabbit anti-insulin (1:500, Cell Signaling); rat anti-endomucin (1:500, Santa Cruz Biotechnology); rabbit anti-fibronectin (clone AB1942 1:5,000, Chemicon); and mouse anti-collagen I (1:300, Abcam). Nuclei were labeled using dapi (Sigma). One to four slices were randomly selected from >3 animals/groups. Images were acquired using a Zeiss LSM 780 confocal microscope and analyzed using Imaris (Bitplane) and ImageJ (NIH).
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5

Neutrophil Distribution in Parabiotic Mice

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We analyzed partner-derived neutrophils distribution in tissues of WT mice that were maintained in parabiosis with Ly6GTOM for 8 wk. Tissues were collected and frozen in OCT, and 30-µm slices were obtained in a cryostat (CM1850; Leica). Tissue sections were incubated with rat anti-endomucin (Santa Cruz) and rat anti-CD31 (eBioscience), followed by incubation with DAPI (Life Technologies), the endothelial-binding lectin IB4 conjugated with AF647 (Thermo Fisher), and a secondary chicken anti-rat AF647 antibody (Molecular Probes). Images from Ly6GTOM+ neutrophils were obtained using an SPE confocal microscope (Leica). 3D images of neutrophils and vessels were reconstructed with Imaris 8.0 (Bitplane AG). Quantification of intra- and extravascular neutrophils was done manually.
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6

Tumor Immunohistochemistry and Immunofluorescence

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The following primary antibodies were used for immunohistochemistry or immunofluorescence staining of tumors: goat anti-LYVE-1 (R&D Systems, cat no. AF2125), rat anti-endomucin (Santa Cruz, cat no. sc-65495), Cy3-conjugated mouse anti-smooth muscle actin (Sigma, cat no. C6198), and hamster anti-podoplanin (abcam, cat no. ab11936). All secondary antibodies were purchased from Jackson ImmunoResearch.
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7

Pancreas pericyte quantification protocol

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Pancreas preparation and antibody labeling were as described (33 (link)). Images were acquired using a Zeiss LSM 780 confocal microscope. Images were analyzed using Imaris (Bitplane), Volocity (Perkin Elmer) and ImageJ (NIH). For quantifications, four slices were randomly selected from at least three animals/group, and all islets present analyzed. A priori, this is sufficiently-powered to detect a minimum 1.2-fold difference with a SD of 40%, a power of 0.9, and alpha = 0.05 (G*Power 3.1). Antibodies used were: rabbit anti-Ki67 (1:200, CliniSciences), guinea-pig anti-insulin (1:400, Abcam), mouse anti-glucagon (1:200, Sigma), rat anti-endomucin (1:500, Santa Cruz Biotechnology), anti-PDGFRβ (1:200, R&D Systems); alexa 647-conjugated anti-αSMA (1:200, Abcam). Nuclei were labeled using dapi (Sigma). To measure islet pericyte core area, single plane confocal images were used, and the surface occupied by a DsRed pericyte cellular body containing a nucleus was measured using ImageJ. Number of pericyte cellular bodies containing a nucleus on single plane images were counted and divided by islet surface or exocrine tissue surface in the image. The proportion of proliferative beta cells was obtained by dividing number of Ki67+ nuclei by total number of nuclei of insulin+ cells in islets, as described (33 (link)).
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8

Antibodies for Immunoblotting and Immunofluorescence

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The following primary antibodies were used for immunoblotting or immunofluorescence staining: goat anti-Lyve1 (R&D Systems, #AF2125; dilution 1:250), rabbit anti-phospho AKT (Ser 473, Cell Signaling, 4060S; dilution 1:1000), rabbit anti-AKT (Cell Signaling, 4685; dilution 1:1000), rabbit anti-phospho ERK1/2 (Cell Signaling, 4370; dilution 1:1000), rabbit anti-ERK1/2 (Cell Signaling, 4695; dilution 1:1000), rabbit anti-tubulin (Cell Signaling, 2148; dilution 1:2000), rabbit anti-GAPDH (Cell Signaling, 2118; dilution 1:1000), chicken anti-GFP (abcam ab13970; 1:4000), rat anti-endomucin (Santa Cruz, sc-65495; dilution 1:50), rabbit anti-Prox1 (AngioBio, 11-002; dilution 1:1000), rabbit anti-neuropilin-2 (Cell Signaling, 3366; dilution 1:500), rabbit anti-Runx1 (Abcam, ab92336; dilution 1:1000), and rabbit anti-KRASG12D (Cell Signaling, #14429; dilution 1:1000).
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