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10 protocols using rabbit anti claudin 5

1

Visualizing Endothelial Cell Junctions and Cytoskeletal Dynamics

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U87 cells were trypsinized, then plated onto 6-well culture plates with suitable culture medium (high-glucose DMEM, 10% fetal bovine serum, 100 U/ml penicillin, 100 μg/ml streptomycin) containing 103 cells. When 80% of the U87 cells were confluent, the complete culture media was aspirated and replaced with fresh EBM-2 medium containing 5% fetal bovine serum. EC monolayers grown on glass coverslips were placed into culture plates and co-cultured for 4 days. The GEC monolayers grown on glass coverslips were fixed with 4% paraformaldehyde and permeabilized with 0.5% Triton X-100. After blocking with 2% bovine serum albumin (BSA) in PBS, the cells were incubated with mouse anti-occludin (diluted 1:50; Life Technologies Corporation, Frederick, MD, USA) and rabbit anti-claudin-5 (diluted 1:50; Life Technologies Corporation, Frederick, MD, USA) to visualize the distribution of occludin and claudin-5, respectively. The cells were incubated with rhodamine-labeled phalloidin (diluted 1:250; Sigma-Aldrich) to assess actin filaments. The cells were incubated with mouse anti-RhoA (diluted 1:150; Abcam, Cambridge, UK) and rabbit anti-ROCK II (diluted 1:50; GeneTex, Irvine, California, USA) to analyze their expression. The glass slides were then evaluated using immunofluorescence microscopy (Olympus, Japan).
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2

Immunostaining of Tight Junction Proteins

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Cells were fixed in 4% paraformaldehyde for 10 minutes at room temperature and permeabilized with 0.1% saponin 30 min. After several washes in PBS (Phosphate Buffered Saline Calcium) (8 g/L NaCl, 0.2 g/L KCl, 0.2 g/L KH2PO4, 2.86 g/L NaHPO4 (12 H2O), pH 7.4), nonspecific sites were blocked for 30 minutes with PBS containing 10% normal goat serum (NGS) (Sigma-Aldrich). Cells are then incubated with primary polyclonal antibody against Claudin-5 (Rabbit anti-Claudin-5, 1/200e, 34–1600, Life Technology) or against ZO-1 (Rabbit anti -O-1, 1/200e, 61–7300, Life Technology) diluted in PBS 2% NGS, for 1 hour at room temperature. After several washing steps with PBS, the secondary polyclonal antibody (Goat anti-rabbit Alexa 568, A11036, Molecular probes) diluted at 1/200e in PBS 2% NGS, was incubated in the dark for 1 hour. Nuclei are stained with Hœchst 33358 and washed with PBS and distilled water.
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3

Immunofluorescence Staining of Cell Junctions

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For immunofluorescence staining, cells or spinal cord sections were fixed in 4% PFA for 15 min and subsequently permeabilized in 0.2% Triton X-100/PBS for 20 min. The samples were treated with 5% bovine serum albumin (BSA) for 1 h at room temperature to block nonspecific binding. The samples were incubated overnight at 4 °C with primary antibody specific for rabbit anti-ZO1 (1:50, Invitrogen), rabbit anti-claudin-5 (1:100; Invitrogen), rabbit anti-occludin (1:50; Abcam), mouse anti-CD31 (1:200, Invitrogen), mouse anti-NeuN (1:500, Abcam), and rabbit anti-GRP78 (1:200, Proteintech). Samples were washed thrice with PBS and incubated with Alexa 594- or Alexa 488-conjugated secondary antibodies (1:200, Jackson ImmunoResearch, USA) for 1 h in the dark. Finally, nuclei were labeled with DAPI and images were obtained under similar exposure time and conditions.
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4

Immunohistochemical Analysis of Angiogenesis Markers

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Immunohistochemistry was performed as described previously (Milner and Campbell 2002 (link)) on 10 μm frozen sections of cold phosphate buffer saline (PBS) perfused brains taken from mice subject to either normoxia (control) or hypoxic conditions. The following monoclonal antibodies were obtained from BD Pharmingen (La Jolla, CA): rat monoclonal antibodies reactive for: CD31 (clone MEC13.3), CD 105 (clone MJ7/18), and the integrin subunit α (clone 5H10-27 (MFR5)). Other antibodies used included: rabbit anti-fibronectin (Sigma, St. Louis, MO), mouse anti-α-SMA-Cy3 conjugate (Sigma, clone 1A4), rabbit anti-claudin-5 (Invitrogen, Carlsbad, CA), and rabbit anti-Ki67 (Vector laboratories, Burlingame, CA). Secondary antibodies used included goat anti-rabbit Cy3 (Jackson Immunoresearch, Baltimore, PA) and anti-rat Alexa Fluor 488 (Invitrogen).
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5

Immunoblotting of Endothelial Cell Proteins

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Cells were harvested with RIPA protein extraction reagent (Sigma-Aldrich) supplemented with protease inhibitors, and protein concentration determined using the Bradford reagent (Sigma-Aldrich). 30 μg of each sample were separated by SDS-PAGE and transferred to nitrocellulose membranes (Hybond ECL, Amersham Biosciences Europe GmbH, Milan, Italy). Membranes were blocked with Odyssey blocking buffer (LI-COR Biotechnology GmbH, Bad Homburg, Germany) diluted 1:1 with PBS for 30 min and probed with the following primary antibodies overnight: rabbit anti-Claudin-5 (1:200, Invitrogen, Cat. #34-1600, Lot. #RB232835), mouse anti-ICAM-1 (1:800, SantaCruz Biotechnologies, Santa Cruz, CA Cat. #sc-8439, Lot. #B2316), rabbit anti-VE-Cadherin (1:1000, Cell signaling, Cat. # 2500, Lot #D87F2), mouse anti-GAPDH (1:800, Millipore, Cat. #MAB374, Lot #2742734), rabbit anti-β-actin (1:1000, Sigma-Aldrich, Cat. #A2066, Lot #095M46V). Membranes were then processed for immunodetection using specific fluorescent IRDye®680- or IRDye®800-conjugated secondary antibodies (LI-COR, Cat. # 926-32211, Lot #C20906-02 and Cat. #926-68070, Lot #C20925-04). Detection of specific bands was carried out using the LI-COR Odyssey® Infrared Imaging System (LI-COR Bioscience). Band intensity was analyzed using the image processing software “Image J” developed by NIH and in public domain.
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6

Antibody Characterization for Testisin and Cell Markers

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The anti-testisin monoclonal antibody MAbD9.1 was purified from the PTA-6077 hybridoma cell line (ATCC Pro104.D9.1) and characterized for both mouse and human anti-testisin specificity (S2 Fig), since available commercial anti-testisin antibodies were found not to specifically recognize murine or human testisin. Additional antibodies were rat anti-CD31 (BD 553370), rabbit anti-occludin (Invitrogen 71–1500), rabbit anti-ZO-1 (Invitrogen 61–7300), rabbit anti-claudin-5 (Invitrogen 34–1600), rabbit anti-NG-2 (Millipore AB5320), mouse anti-VE-cadherin (Santa Cruz sc-9989), rabbit anti-VE-cadherin (Abcam ab33168), rabbit anti-phospho (Tyr658)-VE-cadherin (Invitrogen 44-1144G), rabbit anti-β-catenin (Cell Signaling 8480), rabbit anti-GAPDH (Cell Signaling 2118), rabbit anti-β-actin (Cell Signaling 4970). Secondary antibodies were goat anti-mouse-HRP (Jackson ImmunoResearch 115-035-146), mouse anti-rabbit-HRP (Jackson ImmunoResearch 211-035-109), goat anti-rat-Alexa Fluor 488 (Invitrogen A11006), goat anti-mouse-Alexa Fluor 555 (Invitrogen A32727), goat anti-rabbit-Alexa Fluor 555 (Invitrogen A32732), goat anti-mouse-Alexa Fluor 488 (Invitrogen A32723).
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7

Immunofluorescence Staining of Brain Sections

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For immunofluorescence staining, each brain section was incubated (2 h) in blocking solution at room temperature. Each section was then incubated at 4 °C overnight with mouse anti-CD31 antibody (1:100; BD Pharmingen), rabbit anti-ZO-1 antibody (1:100; Invitrogen), rabbit anti-occludin antibody (1:100; Invitrogen), rabbit anti-claudin-5 (1:50; Invitrogen) antibody, mouse anti-glial fibrillary acidic protein antibody (GFAP, 1:1000; Millipore, Burlington, MA), rabbit anti-Iba1 antibody (1:200; Wako, Richmond, VA), rabbit anti-VCAM-1 antibody (1:100; Santa Cruz), or rabbit anti-ICAM-1 antibody (1:100; Santa Cruz). Each section was washed five times in Triton X-100 (0.1%) in PBS for 15 min, and then incubated overnight (4 °C) with secondary antibody. Before washing, each section was exposed to 1 μg/ml DAPI and washed five more times with 0.1% Triton X-100 (0.1%) in PBS for 10 min each. Each antibody was dissolved in antibody diluent (Dako, Santa Clara, CA). The confocal images were recorded at room temperature with ZEN software and an upright confocal microscope (LSM 700; Carl Zeiss) using predefined ZEN software configurations for Alexa Fluor 594, Alexa Fluor 488, and DAPI.
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8

Immunohistochemical Profiling of Spinal Cord

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Immunohistochemistry was performed as described previously [22 (link)] on 10 µm frozen sections of cold phosphate buffered saline (PBS) perfused spinal cords taken from mice subject to either normoxia (control) or hypoxic conditions. The following antibodies were used in this study: rat monoclonal antibodies reactive for CD31 (clone MEC13.3) and the integrin subunit α5 (clone 5H10-27 (MFR5)) (BD Pharmingen (La Jolla, CA), hamster anti-CD31 (clone 2H8, Abcam, Cambridge, MA), rabbit anti-fibronectin and anti-laminin (Sigma, St. Louis, MO), mouse anti-α-SMA-Cy3 conjugate (Sigma, clone 1A4), rabbit anti-claudin-5, rabbit anti-occludin and rabbit anti-ZO-1) (all from Invitrogen, Carlsbad, CA), and mouse anti-Ki67 (Vector laboratories, Burlingame, CA). Secondary antibodies used included goat anti-rabbit Cy3, goat anti-rat Cy3, goat anti-mouse Cy3, and goat anti-rabbit Cy5 (far red) (all from Jackson Immunoresearch, Baltimore, PA) and anti-rat Alexa Fluor 488 and anti-hamster Alexa 488 (both from Invitrogen).
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9

Immunohistochemical Characterization of the BBB

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After dissection, PFA-perfused brains and livers were fixed in 4% PFA at 4°C for 6 hours, then cryoprotected in 30% sucrose and embedded in Tissue-Tek OCT. For immunofluorescence staining for Rab7a, Claudin-5 and ZO-1, brains were dissected after perfusion with PBS, fresh-frozen in Tissue-Tek and sections were fixed with cold 95% ethanol for 30 minutes and acetone for 1 minute followed by three 5-minute washes with PBS. Brains were sectioned in 12 µm-thick coronal slices spanning all bregma regions of interest using a Leica cryostat. For primary mBECs cultures, cells were fixed with cold 95% ethanol for 30 minutes and acetone for 1 minute followed by three 5-minute washes with PBS. The following primary antibodies were used: rabbit anti-Rab7a (1:100, Abcam), rabbit anti-ZO-1 (1:500, Invitrogen), rabbit anti-GLUT1 (1:200, Thermo Scientific), rabbit anti-Claudin5 (1:500, Invitrogen), rabbit anti-VE-cadherin (1:250, Abcam), rat anti-CD68 (1:500, Abcam), rabbit anti-Iba1 (1:1000, Wako), mouse anti-NeuN (1:500, Millipore). BSL-rhodamine (1:250, Vector Laboratories) was used to label the vasculature.
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10

Immunostaining of Brain Tissue Sections

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The brain sections were incubated in blocking solution for 2 h at room temperature, and then incubated at 4 °C overnight with one of the following antibodies: mouse anti-CD31 (1:100; BD Pharmingen), rabbit anti-ZO-1 (1:100; Invitrogen), rabbit anti-occludin (1:100; Invitrogen), rabbit anti-claudin-5 (1:50; Invitrogen), mouse anti-glial fibrillary acidic protein (GFAP, 1:1000; Millipore), mouse anti-CD11b (1:100; BD Pharmingen), rabbit anti-VCAM-1 (1:100; Santa Cruz), and rabbit anti-ICAM-1 (1:100; Santa Cruz). After five washes in 0.1% Triton X-100 in PBS for 15 min each, the sections were incubated with secondary antibody overnight at 4 °C. Before washing, the sections were treated with 1 μg/ml 4′,6-diamidino-2-phenylindole (DAPI) and washed five more times with 0.1% Triton X-100 in PBS for 30 min each. All antibodies were dissolved in antibody diluent (Dako). Confocal images were captured at room temperature with ZEN software on an upright confocal microscope (LSM 700; Carl Zeiss) using the predefined ZEN software configurations for Alexa Fluor 546, Alexa Fluor 488, and DAPI.
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