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5 protocols using anti cxcr3

1

CD8+ T Cell Migration Assay

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Isolation of CD8+ T cells from HD samples was performed with CD8 magnetic beads (Miltenyi Biotech, Bergisch Gladbach, Germany) according to manufacturer’s instructions. Freshly isolated CD8+ T cells, anti-CXCR3 (10 ng/mL, Abcam), or Stattic (10 nM; S7024; Selleck Chem, Houston, TX)-treated CD8+ T cells as well as peripheral blood mononuclear cells (PBMCs) from HDs were seeded on the upper chambers of a 5.0-μm pore Transwell. Supernatants of tumor tissue, anti-CXCL10 (100 ng/mL, Abcam), or recombinant human (rh) CXCL10 (Peprotech, Rocky Hill, NJ) were added to the lower chambers. CD8+ T cells in the upper chambers were pretreated with rhIL-17A (20 ng/mL), Stattic (10 nM), and/or the supernatants of enriched Th17 cells (5 × 106) with or without anti-IL-17A (10 ng/mL) for 48 h in vitro. Migrated cells in the lower chambers were then counted and analyzed by flow cytometry after 12 h.
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2

Immunohistochemical and Immunofluorescence Analysis of Colorectal Cancer

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Specimens from CRC patients and mice were formalin fixed, sectioned, and embedded into paraffin for immunohistochemistry. Immunofluorescence was performed with frozen samples and freshly fixed cells. The following antibodies were used: anti-CD8 (1:500), anti-CXCL10 (1:300), anti-CD4 (1:300), anti-IL-17A (1:300), and anti-CXCR3 (1:300; all Abcam, Cambridge, UK). Immunohistochemistry and immunofluorescence were performed as described elsewhere [33 (link), 34 (link)]. For immunohistochemistry, three fields of view per sample were imaged. The intensity of immunostaining was considered when analyzing the data. The percentage scoring of immunoreactive cells was as follows: 0 (< 10%), 1 (10–40%), 2 (40–70%), and 3 (> 70%). Staining intensity was visually scored and stratified as follows: 0 (negative), 1 (yellowish), 2 (light brown), and 3 (dark brown). Immunoreactivity scores (IRS) were obtained by multiplying the two items to a total score and ranged from 0 to 9. Protein expression levels were further analyzed by classifying IRS values as low (based on an IRS value ≤ 5) and as high (based on an IRS value > 5).
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3

Pericyte Phenotype and CXCL3 Secretion

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Pericytes were grown on gelatin coated chamber slides (Nalgene) for 24–48 hrs. Identification of pericytes markers was preformed using the following antibodies; anti-α-SMA (sigma), anti-NG2 (Milipore), anti-desmin (Cell Signaling), anti-CXCR3 (Abcam), and anti-CXCR3B (ProteinTech). For analysis of CXCL3 ligand secretion, pericytes were incubated in complete media with INF-γ (25 nM) for 4 hrs. Control cells were treated with an equal volume of diluent. The cells were fixed with 2% paraformaldehyde-PBS and then incubated with rabbit anti-IP-10 (PeproTech), rabbit anti-IP-9 (PeproTech) or IgG (Jackson Immunoresearch) antibody. The cells were incubated with Dapi (Sigma, St. Louis, MO) and a corresponding secondary antibody FITC-conjugated (Jackson Immunoresearch). The cells were visualized using an Olympus Fluoview 1000 confocal microscope using an UPlanSApo 20x/0.85 oil or UPlanFLN 40x/1.3 oil objective.
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4

Quantification of Matrix Metalloproteinases and Chemokine Receptors

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Total protein was extracted from cells using RIPA buffer. Protein was quantified
by BCA method. For western blot, total 20 μg sample was loaded on the gel. After
electrophoresis, PVDF membranes were used for protein transfer from the gel.
Membranes were incubated with anti-MMP2 RabMAb (1:1000, Abcam, USA), anti-MMP3
(1:1000, Abcam, USA), anti-MMP9 (1:1000, Abcam, USA), anti-CXCR3 (1:1000, Abcam,
USA), anti-CXCR4 (1:1000, Abcam, USA), anti-CXCR6 (1:1000, Abcam, USA) over
night at 4 °C. All bands were normalized to anti-human β-actin monoclonal
antibody (1:500, ZSGB-bio, China). ECL system (Thermo Fisher, USA) was used for
imaging after incubating with secondary antibody.
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5

Subcellular Protein Analysis in A549 Cells

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A549 whole cell extracts (WCE) were obtained using RIPA buffer (Sigma-Aldrich) and nuclear and cytoplasmic extracts were prepared and Western blotting carried out as previously described(33 (link)). Nuclear and cytoplasmic extracts were obtained from cultured A549 cells using Active Motif® nuclear extract kit as per the manufacturer’s instructions. Antibodies used were as follows: anti-CXCR3, anti-Smad7 (Abcam), anti-phosphorylated-Smad2 (pSmad2), anti-total Smad2, anti-phosphorylated-Smad3 (pSmad3), anti-total Smad3, anti-histone H3, anti-E-cadherin, GAPDH antibody (Cell Signaling Technology), anti-β-actin antibody (Sigma-Aldrich). Confirmatory immunopeptide blotting for CXCR3 was performed using a peptide against which the antibody was raised (Abcam).
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