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11 protocols using cd24 apc

1

Comprehensive Hematopoietic Profiling in Mice

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Peripheral blood from each mouse was subjected to complete blood count. Tibias, femurs, iliac crests, spines, ulnae, radii, and humeri were harvested for bone marrow cells. Spleen and thymus were collected for lymphocyte staining. Flow cytometry staining for all hematopoietic subpopulations including T cell developmental stages was performed as previously described (Yu et al., 2015a (link)). For B cell development, the following scheme was used: B220-Pacific Blue (BD Biosciences 558108), IgM-PE-Cy5 (eBiosciences 15-5790-82), CD43-fluorescein isothiocyanate (FITC) (eBiosciences 11-0431-82), CD24-APC (Biolegend 101814), and BP1-PE (eBiosciences 12-5891-83). Definitions of stages of B cell maturation were as follows: A′ pre-pro-B (IgMB220+CD43+BP1CD24), B′ pro-B (IgMB220+CD43+BP1CD24+), C′ pro-B (IgMB220+CD43+BP1+CD24lo), C″ pro-B (IgMB220+CD43+BP1+CD24hi), pro-B (IgMB220+CD43+), pre-B (IgMB220+CD43), B progenitors (IgMB220+), immature B (IgM+B220lo), and mature B (IgM+B220hi). For cell-cycle analysis, bromodeoxyuridine-FITC and 7AAD, or Ki67-FITC and DAPI staining were coupled with staining of specific populations to reveal their cell-cycle status.
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2

Evaluation of Anticancer Compounds in Cell Lines

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Human embryonic kidney (HEK 293T) cells, normal liver (LO2) cells, normal breast (MCF-10A) cells and breast cancer (MDA-MB-231, MDA-MB-468, BT549, T47D) cell lines were cultured in DMEM (Gibco, CA, USA) supplemented with 1% penicillin and streptomycin, and 10% fetal bovine serum (Gibco). Cells were incubated at 37°C/5% CO2 in a humidified atmosphere. Compounds 114 (purity > 95%) were purchased from J&K Scientific Ltd. (Hong Kong, China). The positive control dinaciclib (15) was bought from Selleck (Houston, CA, USA). All the compounds were dissolved in dimethyl sulfoxide (DMSO). The CDK9 Assay Kit was obtained from BSP Bioscience (San Diego, CA, USA). Actinomycin D (ActD) and cycloheximide (CHX) were purchased from Beyotime (Shanghai, China). TurboFect™ Transfection Reagent was purchased from Thermal Fisher (Catalog number: R0532). The sources of the antibodies are indicated separately in the procedures below. CD44-FITC and CD24-APC were purchased from BioLegend (San Diego, CA, USA). MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) was obtained from Sigma–Aldrich (St. Louis, MO, USA).
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3

Murine Immune Cell Profiling by Flow Cytometry

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Following cell separation, murine macrophage and DC subsets were resuspended in FACS buffer (PBS supplemented with 2% FBS) (100ul/well) and incubated with CD16/CD32 (Mouse BD Fc Block) (BD Biosciences) to block non-specific binding. Then, samples were stained with labeling check reagent (Miltenyi Biotec), CD45-APC/APC-Vio770 (Biolegend), CD11c-PE-Cy7 (BD Biosciences), Siglec F-PerCP-efluor (BD Biosciences), CD11b-FITC (BD Biosciences), F4/80-PE (Miltenyi Biotec), Ly6c-APC (BioLegend), MHC II-Superbright 645 (Invitrogen), CD103-PerCP-efluor (BD Biosciences) CD24-APC (BioLegend) a viability dye (LIVE/DEAD Fixable yellow, Invitrogen). Following this, cells were incubated with antibodies for 30 minutes at 4°C then washed three times with FACS buffer and fixed with 2% formaldehyde. Samples were analyzed on an Acea Novocyte 3000 flow cytometer (Agilent Technologies, Santa Clara, CA), and data were analyzed using NovoExpress software (Agilent Technologies).
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4

Antibody Validation for Protein Analyses

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The primary antibodies used were as follows: MEF2D (BD Biosciences, San Jose, CA, USA); MEF2A (C‐21 Santa Cruz Biotechnology, Dallas, TX, USA); p53 and pERK (Cell Signaling Technology, Leiden, the Netherlands); p21, Actin, anti‐BrdU, FLAG M2 and RACK‐1 (Sigma‐Aldrich); RAS (Abcam, Cambridge, MA, USA); GFP and HDAC4 (Paroni et al., 2004); and HDAC5 (Clocchiatti et al., 2015). Anti‐CD44‐FITC (BD Biosciences) and CD24‐APC (BioLegend, San Diego, CA, USA) were used with matched control antibodies, anti‐mouse IgG1 FITC and IgG2a APC (Miltenyi Biotec, Bergisch Gladbach, Germany). HDAC7 antibodies were generated in rabbits by injecting recombinant histidine‐tagged HDAC7 fragment aa 261–522. For anti‐HDAC7 antibody purification, HDAC7 was fused to glutathione S‐transferase and cross‐linked to glutathione‐Sepharose as described previously (Paroni et al., 2004).
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5

Comprehensive Immune Cell Profiling

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Bone marrow, peripheral blood, and splenic B cells from cCD79 and wild type mice were analyzed using the following antibodies: hCD79A-PE (R&D Systems, FAB69201P); hCD79B-PE (abcam, ab33295); mCD79B-AF488 ([HM79], made in house); hCD79A-AF647 ([Curly-14], made in house); B220-BV786 (BD, 563894); B220-APC (BD, 103212); B220-PE (BD, 561878); CD43 ACP-Cy7 (BD, 562866); BP1-PE (BD, 553735); CD24-APC (BioLegend, 101814); IgD-FITC (BioLegend, 405704); IgM-BUV396 (BD, 564025); CD19-FITC (BioLegend, 152404); CD93-APC (BioLegend, 136510); CD23-FITC (BD, 561772); CD1d-PE (BD, 553846); CD95-PE (BD, 554258); GL7-FITC (BD, 553666); fab anti-mIgG (H+L)-AF647 (Jackson ImmunoResearch, 115–606-072); phospho-Syk (Y352)-PE (BD, 557881); PTEN-PE (BD, 560002); mouse IgG1 isotype control-PE (BD, 559320).
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6

Comprehensive Immune Cell Profiling

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Analysis of B and T cell subsets was performed by flow cytometry on whole blood after red blood cell lysis (BD Pharm lyse, BD Biosciences, San Jose, CA, USA), using mouse anti-human CD3 (FITC, Biolegend, San Diego, CA), CD4 (PE, Biolegend), CD8 (APC, Biolegend), CD19 (PerCP-Cy5.5, Biolegend), CD21 (PE, BD Bioscience), CD24 (APC, Biolegend), CD27 (APC, eBioscience, San Diego, CA), CD38 (FITC, eBioscience), CD45RA (FITC, Biolegend), CD45RO (PerCP-Cy5.5, Biolegend), CCR7 (Pacific Blue, Biolegend), IgM (PE, Southern-Biotec, Birmingham, AL), IgD (FITC, BD Bioscience). Data were acquired on an LSR-Fortessa (BD Bioscience) and analyzed with FlowJo software (Version 9.6.4).
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7

Flow Cytometry Analysis of hSCAP Markers

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To confirm the identity of the hSCAPs, flow cytometry was used to analyze the expression of stem cell surface markers. Briefly, hSCAPs were trypsinized and resuspended in PBS, then the cell density was adjusted to 1 × 107 cells/mL. hSCAPs were incubated with fluorescence-conjugated monoclonal antibodies (CD45-FITC, CD24-APC, and CD146-PE; Biolegend, San Diego, CA, USA) in the dark at room temperature for 20 min. Their isotype control antibodies were used to determine nonspecific fluorescence. After rinsing twice with PBS, the cells were subjected to analysis on a flow cytometer (BD Biosciences, San Jose, CA, USA).
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8

Characterization of Regulatory B Cells in Multiple Myeloma

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Bregs were characterized as CD19+CD24hiCD38hi in BM samples from NDMM patients by FCM as previously described (17 (link), 18 (link)). Heparinized BM was obtained from NDMM patients prior to treatment. Briefly, BM mononuclear cells (BMMNCs) were isolated and washed twice in PBS. After discarding the supernatant, BMMNCs were incubated with antibodies against CD38 (PE-cy7), CD19 (FITC), and CD24 (APC) (BioLegend) for 15 min. Excess (unbound) antibodies were removed by washing with PBS, and cells were resuspended in 0.2 ml PBS for FCM detection (Beckman).
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9

Multilineage Differentiation Profiling

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Antibodies to the transferrin receptor, an erythroid precursor marker, CD71 APC-Cy7 (Biolegend Cat # 33410) and the glycophorin A erythrocyte marker CD235a PE-Cy7 (Biolegend Cat # 349112) were used for surface staining to evaluate erythroid lineage differentiation. Appropriate isotype controls from Bio Legend were used for gating. Myeloid lineage detection was evaluated using surface markers CD24 APC (Biolegend Cat # 311118) and CD33 PE-Cy5 (Biolegend Cat # 303406). Following surface marker staining, cells were fixed with fixation buffer (Bio Legend Cat # 420801), permeabilized with Foxp3/Transcription Factor Staining Buffer Set (Invitrogen eBioscience Cat # 00552300) and stained for ARID3a with goat antihuman ARID3a peptide-specific antibody, as we described previously (31 (link)). Donkey anti-goat IgG PE (Invitrogen Cat# Pl31860) was used as the secondary antibody. Data were collected on a Stratedigm S1200Ex and data post processing and analysis was performed using FlowJo (Tree Star) software version 10.
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10

BMMNC Immunophenotyping by Flow Cytometry

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BMMNCs were washed twice in PBS. After discarding the supernatant, BMMNCs were incubated with antibodies against CD38 (PE-cy7), CD19 (FITC), and CD24 (APC) (BioLegend ) for 15 min. Excess (unbound) antibodies were removed by washing with PBS and cells were re-suspended in 0.2 mL PBS for flow cytometry detection (Beckman).
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