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9 protocols using apc mouse igg1

1

Multicolor Flow Cytometry Analysis

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Flow cytometry was done as previously described [39 (link)]. Briefly, cells were washed with FACS-buffer (containing 0.01% sodium azide, 0.5% BSA, and 2 nM EDTA, all Sigma Aldrich) three times. For antibody incubation, cells were resuspended in 40 µL FACS-buffer supplemented with either 5 µL APC anti-human CD90 Antibody and 5 µL Alexa Fluor® 488 anti-mouse/human CD44 antibody or their respective isotype controls (APC Mouse IgG1, κ Isotype Ctrl (FC) Antibody, Alexa Fluor® 488 Rat IgG2b, κ Isotype Ctrl Antibody, all BioLegend, San Diego, CA, USA). After incubation on ice in the dark for 1 h, 1 mL FACS-buffer was added and the cells were centrifuged. The supernatant was discarded, and cells were resuspended in 500 µL FACS-buffer and measured using the FACS Canto II (BD Biosciences, Heildelberg, Germany). At least 50,000 events of each sample were recorded. Figures were created using FlowJo Version 10.7.1 (FlowJo LLC, Becton, Dickinson & Company, Franklin Lakes, NJ, USA).
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2

IFNAR1 Expression in DENV-Infected Cells

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Cells were cultured, left uninfected or DENV-infected, as described above. At 24 h post infection, cells were harvested, blocked in phosphate-buffered saline with 3% (w/v) bovine serum albumin and immunostained with control IgG (APC Mouse IgG1, cat 3400119, BioLegend) or anti-IFNAR1 (allophycocyanin (APC) anti-mouse IFNAR1, cat #127313, BioLegend)-conjugated antibody. Stained cells were fixed and subjected to flow cytometry (Accuri, BD systems, Franklin Lakes, NJ, USA). Staining was performed in triplicate and repeated on n=2 independent pMEF isolations.
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3

Characterization of Mesenchymal Stem Cells

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When the isolated cells reached the third passage in the culture conditions, their cell surface antigen expressions were evaluated by flow cytometric analysis for characterization. For this purpose, MSC-specific markers CD44-PE and CD90-APC were analyzed as positive markers, and endothelial CD34-FITC and hematopoietic CD45-APC-Cy were used as negative markers for MSCs (BD the Biosciences, USA) [18 (link)]. Isotype antibodies determined for each antibody were used as negative control (Biolegend, San Diego; APC mouse IgG1, κ isotype control, APC/Cyanine7 mouse IgG1, κ isotype control, PE mouse IgG1, κ isotype control, FITC mouse IgG1, κ isotype control). Briefly, the cells were first collected by trypsinization and pelleted by centrifugation at 1500 rpm for 5 min. The number of viable cells was determined by staining the cells with trypan blue and counting. 106 of cells were pipetted through a 70-μm filter, and the cells were separated from each other for flow cytometry analysis. After washing twice in staining buffer (2% FBS in PBS), primary and isotype antibodies were added to the mixtures and incubated in the dark for 30 min. After incubation, the cells were washed two more times with staining buffer and then analyzed by BD FACS Callibur [6 , 18 (link)]. This analysis was repeated three times, and the results are given as mean + SD.
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4

Multiparametric Flow Cytometry Assay

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The following antibodies were used to stain in the study. The anti‐CD8 (PE), anti‐CD4 (FITC), anti‐CD56 (FITC), anti‐CD137 (PE), anti‐CD107 (APC) (BD Biosciences), and anti‐CD3 (Pacific blue) were purchased from Beckman Coulter. The following antibodies were used: APC Mouse IgG1, k isotype ctrl Antibody (BioLegend), IgG1 (mouse)‐FITC, IgG1 (mouse)‐PE, and IgG1 (mouse)‐PC5 (Beckman Coulter). Data were acquired utilizing FACS Canto II (BD Biosciences) and data were analyzed by using the FlowJo (Treestar).
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5

Immunophenotyping of Cytotoxic Lymphocytes

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The anti-human CD3-PERCP, CD16-Brilliant Violet 510TM, CD56-Brilliant Violet 421TM, CD226-TITC, CD96-PE, TIGIT-APC, FITC mouse IgG1, PE mouse IgG1, and APC mouse IgG1 antibodies were all purchased from Biolegend (San Diego, CA, USA), as was the RBC lysis/fixation solution. The anti-human CD155 antibody was obtained from NOVUS (Littleton, CO, USA).
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6

Flow Cytometric Analysis of NK Cell Ligands

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Flow cytometric analysis was performed according to recently published guidelines (Andrea Cossarizza 2019). Huh7 cells were harvested using cell dissociation buffer (Gibco-Thermo Fisher Scientific, Waltham, Massachusetts, USA) to prevent loss of trypsin-sensitive ligands. Subsequently, cells were blocked with mouse serum to prevent unspecific antibody binding and then stained with the viability dye 7AAD (Biolegend San Diego, California, USA), followed by staining for NK cell ligands with human B7-H6 APC-conjugated antibody (FAB7144A, clone # 875001; R&D Systems, Minneapolis, Minnesota, USA), human ULBP-2/5/6 PE-conjugated antibody (FAB1298P, clone # 165903, R&D Systems), MICA/B AF488 (FAE-13001G, 1 3 RD Systems) or isotype controls APC mouse IgG1 (Bio-Legend), FITC mouse IgG1 (BioLegend), PE-mouse IgG1 (Santa-Cruz) and PE-Cy5 mouse IgG1 (BD Biosciences, Heidelberg, Germany). Cells were analyzed by LSR Fortessa (BD, Franklin Lakes, New Jersey, USA) and FlowJo (BD).
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7

Flow Cytometry Analysis of T-cell Responses

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For cell preparation, tumor tissues were dissociated by using according to the instructions, and CD8 T cells were purified by magnetic beads (Miltenyi, 130-045-201). For cultured cells, cells were harvested and adjusted to 1 × 105/100 μl, stained with antibodies (PD-L1-PE, BioLegend, 329705; B7-H3-PE, BioLegend, 331605; CD8-FITC, BioLegend, 344704; IFN-γ-APC, BioLegend, 502511; TNF-α-APC, BioLegend, 502913; IL-10-APC, BioLegend, 501409; IL-1β-APC, 17-7114-80, Thermo; Mouse IgG1-PE, BioLegend, 400112; Mouse IgG1-FITC, BioLegend, 400107; Mouse IgG1-APC, BioLegend, 400119) for 30 min, washed once, and centrifuged at 900 r/min. Finally, the supernatant was removed and resuspended in PBS for flow cytometry. The results of flow cytometry were analyzed using FlowJo software.
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8

Multiparametric Immune Cell Analysis

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Fetal bovine serum (FBS), RPMI 1640 culture medium, phosphate-buffered saline (PBS), and antibiotic solution (penicillin/streptomycin) were purchased from GIBCO (Gibco BRL Laboratories, Grand Island, NY, USA). Ficoll-Histopaque 1077-1, phorbol 12-myristate 13-acetate (PMA), and brefeldin-A (BFA) were purchased from SIGMA (St. Louis, MO, USA), Ionomycin from ENZO Life Sciences (USA), 7-AAD viability staining solution and reagents for cell staining, fixation and permeabilization as well all monoclonal antibodies used for flow cytometric analysis such as: anti-CD19-fluorescein isothiocyanate (FITC), anti-GM-CSF-phycoerythrin (PE), anti-CD3-FITC, anti-CD27-allophycocyanin (APC), anti-CD38-PE/Cy5 and appropriate isotype controls mouse IgG1-FITC, Rat IgG2α-PE, mouse IgG1-APC, and mouse IgG1-PE/Cy5 were obtained from Biolegend (CA, USA). Finally, the 96 rounded bottom well plates were purchased from Costar (Cambridge, MA, USA).
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9

Characterizing Cancer Stem Cells

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Cancer stem cells (CSCs) were characterized as CD44+/CD24- subpopulations. Following the apoptosis assay protocol described previously, cells from each treatment group were also labeled using anti-CD44-APC (338805) and anti-CD24-Brilliant Violet 421 (311121) monoclonal antibodies (BioLegend San Diego, CA, USA). Mouse IgG1 APC (400119) and mouse IgG2a Brilliant Violet 421 (400259) constituted isotype controls (BioLegend). The following control samples were used to calibrate the instrument: unlabeled, Annexin-V only, PI only, AV/PI, Mouse IgG1 APC only, mouse IgG2a Brilliant Violet 421 only, anti-CD44-APC only, and anti-CD24-Brilant Violet 421. Flow cytometry plots were analyzed using FlowJo software (FlowJo, Ashland, OR, USA).
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