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6 protocols using anti acox1

1

Molecular Mechanisms of Anti-Inflammatory Agents

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3-Amino-1, 2, 4-triazole (#A8056), N-acetyl-l-cysteine (#A7250) and Chloroquine (#C6628), were purchased from Sigma-Aldrich. Recombinant mouse TNF-α (#MTA00B) and IL-6 (#M6000B) enzyme-linked immunosorbent assay (ELISA) kits (Quantikine) for cytokine analysis were bought from R&D Systems (Minneapolis, MN). Anti-PMP70 (#sab4200181, Sigma-Aldrich), anti-Catalase (#ab16731, Abcam), anti-SQSTM1/p62 (#H00008878-M01, Abnova), anti-LC3 (#L8918, Sigma-Aldrich), anti-Pex5 (#GTX109798, GeneTex), anti-Pex7 (#20614-1-AP, Proteintech), anti-DBP (#TA308904, OriGene), anti-ACOX1 (#10957-1-AP, Proteintech), anti-UBXD8 (#NB100-1296, Novs), anti-HA (#ab130275, Abcam), anti-Pex1 (#13669-1-AP, Proteintech), anti-Pex16 (#14186-1-AP, Proteintech), nti-Pex3 (#247042, Abcam), anti-Pex9 (PA5-22129, Invitrogen), anti-Tomm20 (#ab56783, Abcam), anti-NF-κB (#sc-8008, Santa Cruz), anti-IκBα (#9242S, CST), anti-p-IκBα (#2859S, CST), anti-4-HNE (#ab46545, Abcam) and anti-β-actin (#sc-47778, Santa Cruz).
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2

Western Blot Analysis of Liver Proteins

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Whole protein lysates from the mouse liver, serum, and Hepa-1c1c7 cells were extracted using lysis buffer supplemented with protease and phosphatase inhibitors (Sigma-Aldrich). Aliquots containing 30 μg of proteins were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis, transblotted onto polyvinylidene difluoride membranes (Bio-Rad, Hercules, CA), blocked with 4% nonfat dry milk in phosphate-buffered saline solution containing 1% Tween-20, and then incubated overnight with the following antibodies, including anti-DGAT1, anti-ApoB100 (Santa Cruz Biotechnology, Dallas, TX), anti-ACSL1, anti-LAMP1, anti-LAMP2, anti-ATF4, anti-CHOP (Cell Signaling Technology, Danvers, MA), anti-ACADL, anti-ACOX1 (Proteintech Group, Inc, Rosemont, IL), anti-ACADM, anti-LC3II (Novus Biologicals, Littleton, CO), anti-β-actin, and anti-GAPDH (Abcam, Cambridge, MA), respectively. Membranes were then washed and incubated with horseradish peroxidase-conjugated goat anti-mouse immunoglobulin G or goat anti-rabbit immunoglobulin G (Thermo Fisher Scientific, Rockford, IL). The bound complexes were detected with enhanced chemiluminescence (Thermo Fisher Scientific) and quantified by densitometry analysis.
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3

Western Blot Protein Expression Analysis

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In equal amounts, the denatured protein was separated by a 10% SDS-PAGE gel and subsequently transferred onto a PVDF membrane (Millipore, United States). Following blocking, the membranes were incubated overnight with specific primary antibodies, including anti-ACOX1 (Proteintech, 10957-1-AP), anti-α-SMA (Proteintech, 14395-1-AP), anti-IL-1β (Abcam, ab18955), or anti-GAPDH (Proteintech, 60,004-1-lg). Afterward, horseradish peroxidase-conjugated antibodies were applied, and protein bands were visualized using a chemiluminescence kit (Millipore, United States) and the LAS Chemiluminescent Imaging System (LAS500, United States). Quantification of the bands was performed using ImageJ.
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4

Western Blot Analysis of Metabolic Proteins

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Tumor or liver tissues and cells were lysed by 1% SDS lysis buffer and boiled at 95 °C for 10 min, then centrifuged at 12,000 rpm for 10 min at room temperature. The protein concentration was determined by a BCA protein assay reagent kit (Thermo Scientific, Waltham, MA, USA). The protein (35 μg) was separated by SDS-PAGE gels and transferred onto PVDF membranes (Millipore, Billerica, MA, USA). The membranes were blocked for 2h by 5% fat free milk in TBST at room temperature, followed by incubation overnight at 4 °C with the primary antibodies for anti-Glut1 (Abcam, Cambridge, UK), anti-Bcl2 antibody (Abcam), anti-Pparg antibody (Proteintech, Wuhan, Hubei, China), anti-Acaa1 (Proteintech), anti-Acadm (Proteintech,), anti-CD36 (Bioworld, Nanjing, China), anti-Hadh (Proteintech), anti-RXRA (Proteintech), anti-ACOX1 (Proteintech), and anti-β-actin (Sigma), respectively. The membranes were washed with TBST and incubated for 1 h with the corresponding HRP-conjugated second antibodies. Bands were visualized with ECL Reagents (Merck, Billerica, MA, USA).
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5

Antibody Validation for Peroxisomal Proteins

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Anti-PEX5 was purchased from GeneTex (Irvine, CA, USA). Anti-catalase, anti-LAMP-1, anti-PCNA, anti-cathepsin B, and anti-cathepsin D were bought from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-LAMP-2 and anti-LC3 were obtained from Abcam (Cambridge, MA, USA). Anti-TFEB was purchased from MyBioSource (San Diego, CA, USA). Anti-TFEB, anti-p-p70S6K, anti-p70S6K, anti-p-S6R, anti-S6R, anti-p-4E-BP-1, anti-4E-BP-1, and anti-TSC2 were obtained from Cell Signaling Technology (Danvers, MA, USA). Anti-PMP70 was bought from Thermo Fisher Scientific (Waltham, MA, USA). Anti-ACOX1 was purchased from Proteintech (Chicago, IL, USA). Anti-DBP (HSD17B4) was bought from OriGene Technologies (Rockville, MD, USA). Anti- SQSTM1/p62 was obtained from Sigma-Aldrich (St. Louis, MO, USA).
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6

Immunohistochemical Analysis of Tumor Biomarkers

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Fresh CDX/PDX tumors and tissue samples were fixed in 4% PFA and were embedded in paraffin to prepare formalin-fixed paraffin-embedded blocks, following which the blocks were cut into 5-μm paraffin sections. The paraffin sections were sequentially subjected to dewaxing (dewaxing agent), dehydration (gradient alcohol), microwave thermal repair (sodium citrate buffer solution), and blocking (10% goat serum in PBS). The following primary antibodies were used and incubation was performed overnight at 4°C: anti-CD147 (1:500, Abcam), anti-HIF-1α (1:200, Abcam), anti-PPARα (1:100, Abcam), anti-GLUT1 (1:500, Abcam), anti-HK2 (1:100, Abcam), anti-PKM2 (1:200, CST), anti-LDHA (1:200, Proteintech), anti-ACOX1 (1:200, Proteintech), anti-CPT1A (1:100, Proteintech), anti-CPT2 (1:200, Proteintech), and anti-Ki67 (Proteintech, 1:5000). The next day, the sections were incubated with HRP-conjugated anti-rabbit/mouse IgG (ZSGB-BIO, China) and reactions were detected by performing DAB staining (ZSGB-BIO, China). The nuclei were subjected to staining procedures with hematoxylin and were differentiated in 1% acid alcohol, following which the sections were rinsed with running water. Finally, the slides were sealed with neutral gel. Images were acquired by using the Axio Scope A1 microscope (Zeiss, Germany).
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