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5 protocols using anti patm s1981

1

Western Blot Antibody Validation

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For western blot, the following antibodies were used: anti-pATMS1981 (Cell Signaling Technology (CST), #13050, 1:1000), anti-AcH4K16 (CST, #13534, 1:1000), anti-total H2A (CST, #12349, 1:1000), anti-SIRT1 (Santa Cruz, sc-74465, 1:1000), anti-HIF1a (CST, #36169,1:1000), anti-Myc (Abcam, ab32072,1:1000), anti-actin B (CST, #4970) and anti-vimentin (CST, #5741).
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2

Immunoblot Analysis of DNA Damage Response

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Whole-cell extracts (WCEs) were prepared using modified RIPA buffer (150 mM sodium chloride, 10 mM Tris–hydrogen chloride pH 7.4, 0.1% sodium dodecyl sulfate, 0.1% Triton X-100, 1% sodium deoxycholate, 5 mM ethylenediaminetetraacetic acid) with protease inhibitor cocktail (Roche, 11697498001). SDS-PAGE and immunoblots were performed following standard protocols. Primary antibodies are: anti-ATM (Sigma, A1106), anti-pATM S1981 (Cell Signaling, 4526), anti-pKAP1 S824 (Abcam, ab70369), anti-KAP1 (Cell Signaling, 4124), anti-CHK2 (BD Biosciences, 611570), anti-pH2AX Ser139 (Cell Signaling, 9718S), anti-H2AX (Millipore, 07–627), anti-Vinculin (Millipore, 05–386), anti-β-actin (Sigma, A1978) and anti-αTubulin (Calbiochem, CP06).
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3

Immunoblotting of DNA Damage Response Proteins

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Cells were lysed in RIPA Lysis buffer (Millipore) supplemented with 0.1% SDS, protease inhibitor cocktail (Sigma) and phosphatase inhibitor cocktails (Sigma). Samples were prepared using NuPage LDS Sample buffer (Invitrogen) with 100 mM DTT, and proteins were resolved by sodium dodecyl sulphate-polyacrylamide gel electrophoresis using the NuPage MOPS system (Invitrogen). Antibodies used were as follows: anti-Mre11 (Novus Biological, NB 100–142, 1:2000), anti-NBS1 (p95/NBS1, Cell Signaling #3002, 1:1000), anti-Rad50 (Novus Biological, NB 100–154, 1:500), anti-pATM S1981(Cell Signaling #4526, 1:500), anti-pATR S1989 (Kerafast, 1:500), anti-Chk1 S317 (Cell Signaling, #2344, 1:400), anti-Chk1 S345 (Cell Signaling, #2348, 1:400).
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4

Antibody Characterization for DNA Damage Response

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The antibodies used were as follows: anti-Banf1 N-terminus (SAB1409950, Sigma-Aldrich, 1:1000 for WB and 1:500 for IF), anti-Banf1 C-terminus (PRS40170604, Sigma-Aldrich, 1:1000 for WB and 1:500 for IF), anti-Emerin (5430, Cell Signalling Technology, 1:500 for IF), anti-Flag M2 Antibody (F3165, Sigma-Aldrich, 1:1000 for WB and 1:300 for IF), anti-γ-Tubulin (T6557, Sigma-Aldrich, 1:2000 for WB), anti-H3 (4499, Cell Signaling Technology, 1:2000 for WB), anti-β-actin (612656, BD Biosciences, 1:2000 for WB), anti-P-ATM S1981 (5883, Cell Signaling Technology 1:1000), anti-Mre11 (HPA002691, Sigma-Aldrich, 1:1000 for WB), anti-MDC1 (PLA0016, Sigma-Aldrich, 1:1000 for IF), anti-γ-H2AX (ab26350, abcam, 1:1000 for WB; 9718, Cell Signalling Technology, 1:1000 for IF, ab81299, abcam for ChIP), anti-p-DNA-PK S2056 (Abcam, ab124918, 1:1000 wb), anti-DNA-PKcs (12311, Cell Signaling Technology 1:1000 for western blot and ab70205 1:200 for IF), anti-Ligase IV (ab193353, Abcam, 1:1000), anti-Ku70 (ab92450, Abcam, 1:1000) and anti-nucleolin (14574, Abcam, 1:1000). Fluorescent secondary antibodies used were: Donkey anti-Mouse 800 nm (LiCor; IRDye 800CW 926–32212, 1:5000 for WB), Donkey anti-Rabbit (LiCor; IRDye 680LT 926–28023, 1:5000 for WB) and Alexa Fluor 488 (Cat# A32766, Molecular Probes, 1:200 for IF) and 594 (Cat# A32754, Molecular Probes, 1:200 for IF).
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5

DNA Damage Response Pathway Profiling

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The following primary antibodies were used: anti-β-Actin (Thermo Fisher Scientific; #MA1-140), anti-pDNA-PKcs-S2056 (Thermo Fisher Scientific; #PA5-78130), anti-DNA-PKcs (Bethyl Laboratories; #A300-516A), anti-pRPA2-S4/8 (Bethyl Laboratories; #A300-245A), anti-RAD51 (Merck Millipore; #PC130), anti-pKAP1-S824 (Bethyl Laboratories; #A300-767A), anti-pATM-S1981 (Cell Signaling Technology; #13050S), anti-KAP1 (Bethyl Laboratories; #A300-274A), anti-pCHK1-S345 (Cell Signaling Technology; #2341), anti-CHK1 (Santa Cruz Biotechnology; #sc-8408), anti-pH2AX-S139 (Bethyl Laboratories; A300-081A), anti-BRCA1 (Cell Signaling Technology; #9010), anti-CTIP (Bethyl Laboratories; #A300-488A), anti-BLM (Bethyl Laboratories; #A300-110A), anti-V5 (Thermo Fisher Scientific; #R960-25). The secondary antibodies used were Goat anti-Mouse IgG-HRP (Thermo Fisher Scientific; #NA931V) and Donkey anti-Rabbit IgG-HRP (Thermo Fisher Scientific; #NA934V).
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