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4 protocols using step one plus kit

1

Quantifying mRNA Levels by qPCR

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Total RNA was isolated with the TRIzol reagent (Molecular Research Center, Cincinnati, OH, USA). The concentrations of RNA were measured using a NanoDrop ND-1000 instrument (Thermo Fisher Scientific, Waltham, MA, USA). The 2-µg of RNA was reverse-transcribed into cDNA using a Transcriptor First-Strand cDNA Synthesis Kit (Roche Applied Science, Penzberg, Germany). The levels of mRNA were analyzed by qPCR employing a FastStart SYBR Green Master Mix (Roche Applied Science) and a StepOnePlus kit (Applied Biosystems, Foster City, CA, USA) following the manufacturers' instructions. The relative mRNA levels were normalized to those of β-actin. The primer sequences are listed in Table 1.
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2

RNA Extraction and RT-qPCR Analysis

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RNA preparation and cDNA synthesis were performed according to standard protocols. Quantitative RT-PCR analysis was performed using the StepOnePlus™ Kit (Applied Biosystems, Foster City, CA, USA). The 36B4 mRNA level was used for normalization. The primers are listed in Supplementary Table 4.
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3

Metabolic Profiling via Real-Time PCR

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Real time PCR was performed using TaqMan Fast Advanced Master Mix and Taqman gene expression assay probes for Arginase 1, Cd206, Acadl, Acadm, Cpt1b, Pparg, Ppargc1b, Ogt, Mgea5, Fasn, and Acaca (Thermo Fisher). Actb served as an endorse control gene. Each reaction was done in triplicate using an Applied Biosystems Step One Plus kit.
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4

Real-Time PCR Analysis of Neurotrophins

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Real-time PCR was performed using a Step One Plus kit (Applied Biosystems, Foster City, CA, USA). Primers and TaqMan probes specific for the target genes (TaqMan Gene Expression Assay) were obtained from Applied Biosystems (Foster City, CA, USA). The expression levels of target neurotrophins (BDNF and NT-4/5), the neurotrophin receptor (TrkB), and a marker of neuronal activity (c-fos) were assayed using β-actin as an internal control. Individual codes of TaqMan Gene Expression Assays were as follows: BDNF (Mm334042), NT-4 (Mm01701591), TrkB (Mm00435422), c-fos (Mm01302932), and β-actin (4352341E). Individual reactions contained 0.5 µL of target primer, 0.5 µL of β-actin primer (TaqMan Gene Expression Assay, Applied Biosystems), 3 µL of RNase/DNase-free H2O, 5 µL of TaqMan Gene Expression Master Mix (Applied Biosystems), and 1 µL of sample cDNA in a total volume of 10 µL. The thermal profile was a single cycle of 50°C for 2 min and 95°C for 10 min, followed by 40 cycles of 95°C for 15 s and 60°C for 60 s.
The relative expression level of each target gene was determined relative to the transcript of β-actin using the comparative (ΔΔCt) method. Averages of triplicate Ct values were used for the analysis. Transcript abundance was normalized to the average of the adult control group for each target gene.
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