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17 protocols using methanol meoh

1

Metabolite Extraction and LC-MS Analysis

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LC−MS grade water (H2O) and methanol (MeOH) were purchased from Honeywell (Muskegon, USA). Ammonium hydroxide (NH4OH) and ammonium acetate (NH4OAc) were purchased from Sigma-Aldrich (St. Louis, USA). Chemical standards of metabolites were purchased from J&K (Beijing, China), Sigma (St. Louis, USA), Carbosynth (Berkshire, UK), TCI (Tokyo, Japan), and Energy Chemical (Shanghai, China). Serum samples (50 µL) were extracted using 150 μL MeOH with internal standards (d3-leucine and d8-phenylalaine). The samples were then vortexed for 30 s and sonicated for 15 min. To precipitate proteins, the samples were incubated for 1 h at −20 °C, followed by 15 min centrifugation at 17,500×g and 4 °C. The supernatants were transferred to HPLC vials and stored at −80 °C prior to LC−MS analysis.
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2

Alternaria Mycotoxins Analytical Standards

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Acetonitrile (ACN), cyclohexane and ammonia solution (25%) were purchased from VWR (Ismaning, Germany), methanol (MeOH) from Honeywell Riedel-de Haën (Seelze, Germany) and water from Th. Geyer (Renningen, Germany), all in analytical grade. Analytical standards for AOH, AME, ATXI, ATXII, STTXIII, ALTP, AOH-3-G, AOH-9-G and AME-3-G were isolated from fungal culture or synthesised at our chair as described previously (Gotthardt et al. 2020 (link); Liu and Rychlik 2015 (link); Scheibenzuber et al. 2020 (link)). TEN, ALT and TeA were bought from Merck (Darmstadt, Germany), and AOH-3-S and AME-3-S were isolated out of rice cultures of Alternaria alternata, as described in the following section. The labelled standards [2H4]-AOH, [2H4]-AME and [13C6,15 N]-TeA were synthesised in our laboratory as reported previously (Asam et al. 2009 (link), 2011 (link)).
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3

Analytical Methods for Aldehydes Detection

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Acetone (≥ 99.8%, Honeywell, Arlington, UK), acetonitrile (ACN) (≥ 99.9%, Fisher Scientific, Loughborough, UK), methanol (MeOH) (≥ 99.9%, Honeywell, Arlington, UK, trifluoroacetic acid (TFA, 99%, Sigma-Aldrich, Dorset, UK), and formic acid (~ 98%, Fluka Analytical, Buchs, Switzerland) were HPLC grade/reagent grade. Glyoxal and methylGlyoxal (both 40% v/v in water), p-anisaldehyde (98% v/v) used as ISTD, and valeraldehyde (pentanal) (≥ 97.5% v/v) were obtained from Sigma-Aldrich, Dorset, UK. RA free serum and tissue homogenate were purchased from Golden West Biological, CA, USA. The remaining aldehyde standards, 4-hydroxyhexenal (4-HHE), 4-hydroxynonenal (4-HNE), and 4-oxo-2-nonenal (4-ONE), were obtained from Cambridge Bioscience (Cambridge, UK). Working stock solutions (1 mg mL−1) of aldehyde standards were prepared in ACN and stored at − 20 °C. Girard’s reagent T (GT) (99.0–101.0% w/w), dansyl hydrazine (DH) (≥ 95% w/w), and dinitrophenyl hydrazine (DNPH) were HPLC grade obtained from Sigma-Aldrich (Dorset, UK). MALDI matrix α-cyano-4-hydroxycinnamic acid (CHCA) (≥ 98% w/w) was also obtained from Sigma-Aldrich, (Dorset, UK).
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4

Synthesis and Characterization of Phenanthroline Derivatives

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All laboratory reagents used in the experiments were of analytical grade. The deionised water (d.i.H2O) utilised for the experiments was procured from a MilliQTM system (Millipore Australia Pty Ltd., Sydney, NSW, Australia). Phen, 5-Mephen, 5,6-Me2phen, NPX, ACE, N,N′-dicyclohexylcarbodiimide (DCC), dimethyl sulfoxide (DMSO), acetonitrile (CH3CN) and trifluoroacetic acid (TFA) were purchased from Sigma-Aldrich, Sydney, NSW, Australia. Sep-Pak® C18-reverse phase columns were purchased from Waters Australia Pty Ltd., Sydney, NSW, Australia. Deuterated oxide 99.9% (D2O) and deuterated DMSO (DMSO-d6) were purchased from Cambridge Isotope Laboratories, Andover, MA, USA. Methanol (MeOH) was obtained from Honeywell Research Chemicals, NJ, USA. Diethyl ether (Et2O) and acetone (C3H6O) were purchased from ChemSupply Australia, Gillman, SA, Australia. Additional laboratory reagents were acquired from commercial sources.
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5

Preparation of Liquid Chromatography-Mass Spectrometry Solvents

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Ammonium acetate (NH4AC) and ammonium hydroxide (NH4OH) were purchased from Sigma Aldrich. LC-MS grade 0.1% formic acid (FA) in acetonitrile (ACN), 0.1% FA in water (H2O), and methanol (MeOH) were purchased from Honeywell (Muskegon, MI, USA). LC-MS grade acetonitrile (ACN) was purchased from Fisher Scientific (Morris Plains, NJ, USA), LC-MS grade water was purchased from J.T. Baker (Philipsburg, NJ, USA).
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6

Determination of Mycotoxin Metabolites

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DON was obtained from Romer Labs (Tulln, Austria) and CER was purified as previously described [28 (link)]. Cell culture media and supplements were obtained from Gibco® Life Technologies (Karlsruhe, Germany). KH2PO4, KCl, NaCl, Na2HPO4, D-glucose, HEPES, CaCl2, MgCl2, glycin, formaldehyde, sodium dodecyl sulfate (SDS), NaOH and Triton X-100 were purchased from Carl Roth (Karlsruhe, Germany) and Lucifer Yellow CH di-lithium salt from Santa Cruz Technologies (Dallas, TX, USA). For LC-MS/MS measurements, MS grade water was purchased from VWR (Fontenay-sous-Bois, France), acetonitrile (ACN) and methanol (MeOH) from Honeywell (Seelze, Germany). Acetic acid was obtained from Merck (Darmstadt, Germany) and ammonium acetate (both LC-MS grade) from Sigma Aldrich (Vienna, Austria). DON-3-sulfate, DON-15-sulfate and DON-3-glucuronide were kindly provided by Dr. Philipp Fruhmann (Technical University of Vienna) and synthesized as previously described [44 (link)].
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7

Synthesis and Characterization of Platinum(II) Complexes

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All chemicals and reagents were of spectroscopic grade and used without further purification. The deionized water (d.i.H2O) used for the experiments was obtained from a MilliQTM system (Millipore Australia Pty Ltd, Sydney, NSW, Australia). Potassium tetrachloroplatinate(II) (K2PtCl4), S,S-DACH, 1,10-phenanthroline, 5-methyl-1,10-phenanthroline, 5,6-dimethyl-1,10-phenanthroline, CLB, N,N′-dicyclohexylcarbodiimide (DCC), dimethyl sulfoxide (DMSO), acetonitrile (CH3CN), trifluoroacetic acid (TFA), silver nitrate (AgNO3), ascorbic acid (AsA) and 30% hydrogen peroxide (H2O2) were purchased from Sigma-Aldrich, Sydney, NSW, Australia. Sep-Pak® C18-reverse phase columns were purchased from Waters Australia Pty Ltd, Sydney, NSW, Australia. Deuterated solvents such as deuterium oxide 99.9% (D2O) and deuterated acetonitrile (CD3CN) were purchased from Cambridge Isotope Laboratories, Andover, MA, USA. Methanol (MeOH) was obtained from Honeywell Research Chemicals, NJ, USA. Ethanol (EtOH), diethyl ether (Et2O), ethyl acetate (EtOAc) and acetone were purchased from ChemSupply, Gillman, SA, Australia. All other chemicals, reagents, and lab consumables were purchased from commercial sources.
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8

Certified Mycotoxin Standards Acquisition

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Certified mycotoxin standards were purchased as follows: AOH from Alternaria sp. (purity >96%), AME from Alternaria alternata (>98%), TeA copper salt from Alternaria alternata (>98%), and TEN from Alternaria tenuis (>95%) were obtained from Sigma-Aldrich (St. Louis, MO, USA); ALT (>98%) was purchased from ChemFaces (Wuhan, China), and ATX- I (>97%) was obtained from Cayman (Ann Arbor, MI, USA). All mycotoxin standards were prepared at 1 mg/mL in acetonitrile (ACN) and kept at −20 °C. HPLC-grade water, ACN, and methanol (MeOH) from Honeywell Burdick and Jackson (Muskegon, MI, USA) were used for sample preparation. LC/MS-grade water and methanol from Fisher Scientific (Cleveland, OH, USA) were used as the mobile phase. LC/MS-grade ammonium acetate was purchased from Merck (Darmstadt, Germany) and glacial acetic acid (≥99.7%, HPLC grade) for pH adjustment was obtained from Fisher Scientific (Cleveland, OH, USA).
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9

Comprehensive Characterization of Alternaria Mycotoxins

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Water was purchased from Th. Geyer (Renningen, Germany), methanol (MeOH) from Honeywell Riedel-de Haën (Seelze, Germany), and acetonitrile (ACN) and the ammonia solution (25%) were purchased from VWR (Ismaning, Germany), all at least in analytical grade. Reference standards for TEN, ALT, and TeA were bought from Merck (Darmstadt, Germany), while AOH, AME, ATX I, ATX II, STTX III, ALTP, AOH-3-G, and AOH-9-G, AME-3-G as well as AOH-3-S and AME-3-S were either isolated out of fungal extracts or synthesized at our chair as described previously (Liu and Rychlik 2015 (link); Scheibenzuber et al. 2020 (link), 2021 (link)). The stable isotope–labelled standards [2H4]-AOH, [2H4]-AME, and [13C6, 15 N]-TeA were synthesized in our laboratory as reported in literature (Asam et al. 2009 (link), 2011a (link)).

Chemical structures of the six most frequent Alternaria mycotoxins AOH, AME, TeA, TEN, ALTP, and ATX I

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10

Pesticide Analysis in Agricultural Commodities

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Standard stock solutions of the pesticides subjected to official control in agricultural commodities (EC, 2019a) were purchased from CPA Chem (Stara Zagora, Bulgaria) in 10 compatible mixes (10 μg mL -1 each). The rest of the pesticides and the isotopically labeled Procedural Internal Standards (P-IS) were purchased from Dr. Ehrenstorfer GmbH (Augsburg, Germany) and Sigma-Aldrich (Büchs, Switzerland), all with a purity superior to 97.1%.
LC-MS grade formic acid (FA, HCOOH), acetic acid (AA, CH 3 COOH), acetonitrile (ACN) and methanol (MeOH) were purchased from Honeywell (Morristown, NJ). Ultrapure water was produced in the laboratory using a Gradient A10 Milli-Q System (Millipore, Bedfore, MA, USA). AOAC and EN method QuEChERS salts, and Agilent d-SPE Enhanced Matrix Removal-Lipid (EMR-lipid) were acquired from Agilent Technologies (Palo Alto, USA). Ammonium acetate (NH 4 CH 3 CO 2 ) and ammonium formate (NH 4 CO 2 ) were obtained from Fisher Scientific (Loughborough, UK).
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