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3 protocols using ucn 01

1

Culturing Cell Lines for Drug Testing

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All cell lines were kept at 37° C and 5% CO2. 293T cells and JIMT-1 cells were grown in DMEM (Corning) supplemented with 10% fetal bovine serum (FBS, Gibco). SMF cells were grown in DMEM (Corning) supplemented with 10% FBS and 5 mg/ml insulin (Gemini Bio-Products). All media contained 2 mM glutamine (Corning) and penicillin/streptomycin (Corning), unless stated otherwise. Lapatinib was purchased from Santa Cruz Biotech. Axitinib, Dovitinib, KW-2449, staurosporine, UCN-01, midostaurin, lestaurtinib, PHA-665752, SU-14913, and sunitinib were purchased from Selleck Chemicals.
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2

Peptide Mediated Inhibition of Neuroblastoma

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The cell permeable peptide, R9-caPep (RDRDRDRDRDRDRDRDRDCCLGIPEQEY), was created by fusing the L126-Y133 sequence of human PCNA to the C-terminus of a nine D-arginine sequence (R9) through a spacer of two cysteines (CC). The peptide was synthesized by AnaSpec (Fremont, CA). The Chk1 inhibitors, MK-8776 and UCN-01, were purchased from Selleckchem (Houston, TX) and EMD Millipore (Billerica, MA), respectively. siRNAs targeting MYCN and non-targeting siRNAs were purchased from GE Healthcare (Pittsburgh, PA).
The human NB cell lines, SK-N-DZ, SK-N-BE(2)c, BE(2)c, CHP-212, IMR-32, SK-N-AS, SK-N-SH, and SH-SY5Y were obtained from the American Type Culture Collection (ATCC, Rockville, MD). Cells were maintained in DMEM with 10% fetal bovine serum (FBS), 100 units/ml penicillin, and 100 μg/ml streptomycin in the presence of 5% CO2 at 37 °C. The non-malignant HCN1-A cortical neuronal cell line and bone marrow-derived Mesenchymal Stem Cells (hBM-MSCs) were obtained from the ATCC as well and were cultured according to the ATCC instructions. The human embryonic progenitor cell line 7SM0032 was acquired from Millipore (Billerica, MA) and grown in the hEPM-1 Media Kit purchased from the same company.
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3

DNA Combing in Xenopus In Vitro

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DNA combing data using the Xenopus in vitro system from Platel et al. 2015 [35 (link)] were analysed. Briefly, sperm nuclei (2000 nuclei/ μ L) were incubated in Xenopus egg extracts in the presence of cycloheximide, energy mix and 20 μ M biotin-dUTP (Roche Applied Science). UCN-01 (Selleck Chemicals) (or solvent (DMSO) alone as control) was added at 1 μ M. Replication was allowed to continue for 40, 60 or 75 min. In order to increase the number of eye-to-eye distances in control samples at 40 min of the first experiment, data from two additional independent experiments with nearly identical replication content were combined for early S phase (45 and 50 min, respectively) (control 8%, UCN-01 22% replication.) For Chk1 overexpression experiments recombinant and active XChk1 with a N-terminal His-tag was expressed in the baculovirus expression system as described in Platel et al. 2015 [35 (link)]. We chose to moderately overexpress XChk1 threefold by adding 120 nM purified XChk1 (or dialysis buffer as control) in two independent replication reactions, which were stopped at 45 or 55 min, respectively. Labelled DNA was purified and DNA combing was performed as described in Platel et al., 2015 [35 (link)].
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