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Mx3005p real time pcr detection system

Manufactured by Agilent Technologies
Sourced in Germany

The MX3005P Real-Time PCR Detection System is a laboratory instrument designed for the amplification and detection of nucleic acid sequences using the real-time polymerase chain reaction (PCR) method. It provides the core functionality of thermal cycling and fluorescence detection for real-time PCR experiments.

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2 protocols using mx3005p real time pcr detection system

1

Quantitative Gene Expression Analysis

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GO and KEGG enrichment analyses of the two differently expressed transcript data sets were performed using a modified Chi-square test and Fisher’s exact test in R (p-value < 0.01 and false discovery rate < 0.05). Transcription levels of genes were quantified with a MX3005P Real-Time PCR Detection System (Agilent) based on the 2(-delta C(T)) method (Livak and Schmittgen, 2001 (link)). The experiment was performed in a 20 μL volume reaction system containing 10 μL 2 × SYBR Premix ExTaq (TaKaRa) with the intercalating dye SYBR Green. All primers were designed using PRIMER5.0 software and are listed in Supplementary Table S4.
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2

Quantitative PCR analysis of mTLR8 expression

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Primers for mTLR8 (q-mTLR8) were designed based on the Mus musculus TLR8 cDNA sequence and β-actin was used as an internal reference gene to normalize target gene transcript levels (Table I). Quantitative PCR was performed with the Mx3005P Real-time PCR detection system (Agilent Technologies Deutschland GmbH, Waldbronn, Germany). PCR was performed in 20 µl reactions with 2 µl of the cDNA sample, 0.8 µl each of the forward and reverse primers (10 µM), 6.4 µl DEPC-treated water, and 10 µl 2xSYBR Premix Ex Taq II (Takara Bio Inc.). The PCR parameters include 95°C for 30 sec, 40 cycles at 95°C for 5 sec and 60°C for 34 sec, and then 95°C for 15 sec, 60°C for 1 min, and 95°C for 15 sec. The primers for TLR8 and β-actin yielded a single peak in the melting curve and a single band of the expected size on an agarose gel. Data were analyzed according to the efficiency-corrected comparative Cq method and normalized using β-actin expression levels.
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