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Pnlf1 n

Manufactured by Promega
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PNLF1-N is a laboratory equipment product manufactured by Promega. It functions as a plasmid DNA purification system, enabling the extraction and purification of plasmid DNA from bacterial cultures.

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7 protocols using pnlf1 n

1

Recombinant p35-Luciferase Fusion Protein

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The synthetic full-length p35 gene of ASFV (Pig/HLJ/18strain) (Shi et al., 2021 (link)), was amplified with the primers (p35F:5′-GCGAATTCATGGGGAATGACCCGCCGGT-3′, p35R: 5′-CCTCTAGATTAATGGTGATGGTGATGATGCCCCCCTA-3′) including the EcoRI and XbaI restriction enzyme sites (underlined), and the amplified fragment was subsequently purified and cloned into the secreted luciferase expression vector pNLF-1-N (Promega, USA) by the restriction enzyme sites of EcoRI and XbaI. The pNLF-1N-p35 recombinant plasmids were verified by sequencing. The amount of 1 μg pNLF-1N-p35 plasmids were transfected into 2 × 105 HEK 293 T cells using lipofectamine™ 2000 transfection reagent (Invitrogen) according to the manufacturer’s instructions. Thirty-six hours after transfection, the 293T cells transfected with the pNLF-1N-p35 recombinant plasmids were lysed in ice-cold RIPA buffer, the cell lysates was then centrifuged at 10,000 g for 5 min at 4 °C to collect the supernatant. The p35-Luc fusion protein was verified via Western blotting with the inactivated ASFV-positive serum kept in our lab (Shi et al., 2021 (link)). In addition, the specificity of the p35-Luc fusion protein was determined by detecting of the sera raised against three swine pathogens including PRRSV, CSFV and PCV2 via Western blotting. The supernatants were harvested and stored at −20 °C till use.
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2

Construction of Norovirus GII.6 P Domain Plasmid

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The recombination expression plasmid pNLF-P (Figure 1A) was constructed using the luciferase expression vector pNLF1-N (Promega, USA). Fragments of the norovirus GII.6 P domain (NCBI Accession no. MT861044) were amplified from the plasmid pGEX-4T-GII.6P through PCR, employing the following primers: 5′ CCGGAATTCTCAAAGACTAAGCCCTTTAC−3′ and 5′- TAAAGCGGCCGCTTAGCAAAAGCAATCGC−3′. The genome structure of NoV can be found in Supplementary Figure 1. The PCR was carried out under the following conditions: pre-denaturation at 95°C for 5 min, followed by 35 cycles of denaturation at 95°C for 30 s, annealing at 55°C for 30 s, extension at 72°C for 1 min, and a final extension at 72°C for 10 min. Subsequently, the PCR products were inserted into the EcoRI-NotI-cut pNLF1-N vector after double digestion with EcoRI and NotI restriction enzymes (Takara Biotechnology Co., Ltd, China). The resulting recombinant plasmids were verified through DNA sequencing to confirm the absence of PCR-induced errors and were used for cell transfection.
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3

Site-directed mutagenesis of CACNA1C

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Site-directed mutagenesis was performed on full-length human alternative transcript variant 17 CACNA1C (NM_001129843) cloned into the pCMV6-XL4 vector (Origene Technologies) using the QuickChange II XL kit (Agilent Technologies). Human CACN2B (NM_201572) was cloned into the pCMV6-XL5 vector (Origene Technologies). For the Nano-Luciferase assay, WT and mutant Cavα1.2 cDNAs were cloned into the pNLF1-N vector (Promega), whereas for the BRET assay, Cavα1.2 and Cavβ2 cDNAs were cloned into the pNLF1-N and HaloTag-pFN21A vectors, respectively. All clonings were performed using the In-fusion HD Cloning Plus kit (Clontech). All constructs were verified by sequencing of the complete insert. Peptides were synthetized by GenScript (USA). R7W-MP: RRRRRRRW-DQRPDREAPRS; R7W-Scr: RRRRRRRW-DQPPSRRDERA.
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4

Generation of Nluc-DRD3 Fusion Constructs

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For the generation of Nluc-D3R fusion constructs in pcDNA3.1, sequences of the Nluc enzyme19 (link) (pNLF1-N or pNLF1-secN, Promega) and D3R (DRD3, cdna.org) were amplified by polymerase chain reaction and fused in frame with a 4 AA linker (GSSG) by Gibson Assembly62 (link) (New England Biolabs). To achieve surface expression, the fusion protein was either N-terminally tagged with an HA-signal sequence and a FLAG-tag50 (link) or the secretory version of the enzyme19 (link) (pNLF1-secN) was used. Sequence integrity was verified by DNA sequencing (Eurofins Genomics).
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5

Recombinant CHIKV E1 and E2 Protein Expression

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CHIKV E1 and E2 DNA sequence fragments were inserted into the pNLF1-N (Promega, USA, N1351) plasmid, and the recombinant plasmid was transfected into 293T cells to express the recombinant protein. The recombinant antigen sequence of CHIKV rE2 (strain S27-African prototype) is 1,275 nt in length, without the transmembrane region (GenBank accession number AF369024). Standard molecular cloning was performed to clone the E1 glycoprotein (rE1; amino acids 1 to 499) and E2 glycoprotein (rE2; amino acids 1 to 425) open reading frames into a pNLF1-N vector. According to the structural characteristics of E2, we designed five amino acid sequences: a complete E2 glycoprotein, an E2 glycoprotein (rE2, from amino acids 1 to 362) without the transmembrane and cytoplasmic tail regions, and three recombinant proteins based on E2 antigen (Fig. 1B). The five amino acid sequences were designed to distinguish between E2 antigen-specific antibody-binding sites and extensive antibody-binding sites. Three amino acid sequences were designed to distinguish E1 antigen-specific antibody-binding sites. Luciferase fusion of E1 and rE2 was performed using a short linker GGGS-His (8×)-GGGG (Table 5).
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6

Multiplex Serological Profiling for Emerging Viruses

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Serum samples from mice immunized with NiV G-protein (n = 9) and negative mice (n = 9) were prepared in our laboratory. Sera from NiV-, Ebola virus (EBOV)-, Rift Valley fever virus (RVFV)-, Crimean–Congo hemorrhagic fever virus (CCHFV)-, and West Nile virus (WNV)-positive horses were provided by Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences. Sera from patients infected with Chikungunya virus (CHIKV) and Dengue virus (DENV) were provided by Guangdong Center for Disease Control and Prevention (China), and normal human and hepatitis C virus (HCV) sera were provided by Nan Fang Hospital, Southern Medical University, Guangdong, China. These sera were kept in our laboratory and were validated in previous studies. A bicinchoninic acid (BCA) protein assay kit was purchased from Beyotime (Shanghai, China). The pNLF1-N (Promega, Madison, WI, USA, N1351) plasmid was maintained in our laboratory for subsequent vector construction. A Nano-Glo luciferase kit (Promega, N1120, USA) was purchased from Promega. HEK 239T cells were maintained in our laboratory and cultured in 5% CO2 at 37 °C using Dulbecco’s Modified Eagle Medium (DMEM; Gibco, Waltham, MA, USA) containing 10% fetal bovine serum.
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7

Recombinant CHIKV E1 and E2 Protein Expression

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CHIKV E1 and E2 DNA sequence fragments were inserted into the pNLF1-N (Promega, USA, N1351) plasmid, and the recombinant plasmid was transfected into 293T cells to express the recombinant protein. The recombinant antigen sequence of CHIKV rE2 (strain S27-African prototype) is 1,275 nt in length, without the transmembrane region (GenBank accession number AF369024). Standard molecular cloning was performed to clone the E1 glycoprotein (rE1; amino acids 1 to 499) and E2 glycoprotein (rE2; amino acids 1 to 425) open reading frames into a pNLF1-N vector. According to the structural characteristics of E2, we designed five amino acid sequences: a complete E2 glycoprotein, an E2 glycoprotein (rE2, from amino acids 1 to 362) without the transmembrane and cytoplasmic tail regions, and three recombinant proteins based on E2 antigen (Fig. 1B). The five amino acid sequences were designed to distinguish between E2 antigen-specific antibody-binding sites and extensive antibody-binding sites. Three amino acid sequences were designed to distinguish E1 antigen-specific antibody-binding sites. Luciferase fusion of E1 and rE2 was performed using a short linker GGGS-His (8×)-GGGG (Table 5).
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