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9 protocols using anti aldh1

1

Immunofluorescence Analysis of Colon Tissue

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Human colonic tissue sections were analyzed by imunofluorescence as we previously described [2 (link)]. Briefly we used anti-ALDH1 (BD Pharmingen, Franklin Lakes, 1:50), anti-RXR-alpha (Santa Cruz, 1:50), anti-RAR-alpha (Santa Cruz, 1:50) and anti-MCM2 (Abcam, Cambridge 1:100) as primary antibodies. The use of human tissues was approved by Institutional Review Boards of Thomas Jefferson University and the Christiana Care Health Services, Inc (FWA00006557).
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2

Western Blot Analysis of Stem Cell Markers

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Cell lysates were separated by 10% sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes. After blocking with 5% fat-free milk in Tris-buffered saline, the following antibodies were used for western blotting: anti-Sox2 (1∶500), anti-ALDH1 (BD Biosciences, 1∶500), anti-Bmi1 (1∶500), anti-Oct4 (1∶500), anti-Nanog (1∶500), anti-vimentin (1∶500), anti-snail (1∶500), anti-β-catenin (1∶500), anti-E-cadherin (1∶500), and anti-β-actin (1∶1000) overnight at 4°C. All antibodies were obtained from Santa Cruz Biotechnology unless otherwise specified. After washing, the bound antibodies were visualized using horseradish peroxidase-conjugated anti-goat, ant-rabbit, or anti-mouse IgG (Thermo Fisher Scientific Inc., New York, NY) and the Immobilon Western Chemiluminescent HRP Substrate (Millipore, Billerica, MA) and subsequently visualized on X-ray films [21] (link).
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3

Immunohistochemical Staining Protocols

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For immunohistochemical staining, the slides were incubated overnight with anti-Acetyl-Histone H3 (Cell Signaling, Danvers, MA, USA) and then for 60 min at room temperature (RT) with the anti-rabbit secondary antibody (Vector Laboratories, Burlingame, CA, USA). The vector DAB detection system was used following incubation with diaminoben-zidine tetrahydrochloride (DAB, Sigma-Aldrich Corp., St. Louis, MO, USA) and staining with Mayer’s hematoxylin. Slides from PDX tissues were incubated overnight with anti-ALDH1 (BD Biosciences, San Jose, CA, USA) and anti-Acetyl-Histone H3 (Cell Signaling, Danvers, MA, USA). Slides were then incubated for 60 min at RT with FITC or TRITC-conjugated secondary antibody and stained with Hoechst 33,342 for visualization of DNA content.
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4

Immunohistochemical Staining Protocols

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For immunohistochemical staining, the slides were incubated overnight with anti-Acetyl-Histone H3 (Cell Signaling, Danvers, MA, USA) and then for 60 min at room temperature (RT) with the anti-rabbit secondary antibody (Vector Laboratories, Burlingame, CA, USA). The vector DAB detection system was used following incubation with diaminoben-zidine tetrahydrochloride (DAB, Sigma-Aldrich Corp., St. Louis, MO, USA) and staining with Mayer’s hematoxylin. Slides from PDX tissues were incubated overnight with anti-ALDH1 (BD Biosciences, San Jose, CA, USA) and anti-Acetyl-Histone H3 (Cell Signaling, Danvers, MA, USA). Slides were then incubated for 60 min at RT with FITC or TRITC-conjugated secondary antibody and stained with Hoechst 33,342 for visualization of DNA content.
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5

Characterizing Cancer Stem Cell Markers

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Cells from both adherent and sphere cultures were dissociated into single cells, washed and suspended in PBS. For the identification of cell surface markers, the cells were labelled with anti-CD24, anti-CD44, anti-CD133, or anti-ALDH1 and secondary fluorescein (FITC)- or APC-conjugated antibodies (BD Pharmingen, CA, USA). Flow cytometry was performed on a FACScan system (BD FACSAria™, BD Biosciences, CA, USA). Annexin V for apoptosis analysis: Apoptosis in treated cells was assessed using an Annexin V/FITC Apoptosis Detection kit (BD Bioscience, MA, USA). The cells were stained with PE, Annexin V and 7-amino-actinomycin (7-AAD) and incubated for 15 min in the dark.
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6

Western Blot Analysis of Protein Targets

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DSF-treated HCC cells were subjected to Western blot analysis using anti-p38 (Santa Cruz Biotechnology, Santa Cruz, CA), anti-phospho-p38 (Cell Signaling Technology), and anti-tubulin (Oncogene Science, Cambridge, MA) antibodies. ALDH2-knockdown cells and ALDH1-and ALDH2-double knockdown cells were subjected to Western blotting using anti-ALDH1 (BD Biosciences) and anti-ALDH2 (Abcam, Cambridge, MA) antibodies. GPC3-knockdown cells selected by cell sorting for enhanced green fluorescent protein (EGFP) expression were also subjected to Western blot analysis using anti-GPC3 antibody (Santa Cruz Biotechnology).
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7

Protein Expression Analysis by Western Blotting

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Cells were collected by sample buffer and analyzed by electrophoresis. Proteins were transferred to polyvinylidene difluoride (PVDF, Merck Millipore) membrane and TBST buffer (10 mM Tris–HCl, pH 8.0, 150 mM NaCl, 0.05% Tween 20) containing 5% nonfat milk was used for blocking. Anti-Sp1 (Merck Millipore, 1:3000), anti-actin (Cat# 110,564, GeneTex, 1:5000), anti-GFP (Cat#sc-9996, Santa Cruz, 1:5000), anti-CD44 (GeneTex, 1:2000), anti-β-catenin (Cell Signaling, 1:1000), anti-ALDH1 (BD Biosciences, 1:1000), anti-SUMO-1 (ABclonal, Cambridge, MA, USA, 1:1000), anti-RNF4 (R&D systems, Minneapolis, MN, USA, 1:1000), anti-vimentin (Cell Signaling, 1:3000) and anti-E-cadherin (Cat#610,181, BD Biosciences, 1:1000) were used for probing interested proteins. After incubated with primary antibodies, PVDF membranes were then incubated with secondary immunoglobulin antibodies linked with horse radish peroxidase (Merck Millipore, 1:10,000). ECL Western blotting detection system (Merck Millipore) and ChemiDoc-it imager (UVP, Ultra-Violet Products Ltd., Cambridge, UK) were used for detecting signals.
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8

Immunohistochemical Analysis of Stem Cell Markers

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Human and mouse specimens were incubated in 10% formaldehyde for 72 h for fixation, dehydration, and embedded in paraffin. For immunohistochemistry, xylene was used for dewaxing paraffin-embedded sections and serial diluted ethanol was also used for dehydration. Endogenous peroxidases were blocked by incubating in PBS containing 0.3% hydrogen peroxide for 30 min, and then samples were blocked with 1% bovine serum albumin. Proteins of interest were recognized by incubated with anti-Sp1 (Merck Millipore, 1:500), anti-ALDH1 (Cat# 611,194, BD Biosciences, San Jose, CA, USA, 1:500), anti-CD44 (Cat# 102,111, GeneTex, 1:250), anti-vimentin (Cat# 5741, Cell Signaling, 1:50) and anti-β-catenin antibodies (Cat# 8480, Cell Signaling, 1:200) at room temperature for 3 h, and immunoreactivity was visualized by using Vectastain ABC kit (Vector Laboratories, Burlingame, CA, USA). Sections were photographed by Olympus BX-51 microscope (Olympus Corporation, Tokyo, Japan).
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9

Immunohistochemical Characterization of Tumor Samples

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Formalin fixed tissue was paraffin embedded and sectioned at the University of Michigan Cancer Center core facility. H&E and antibody stains were performed using standard IHC/IF protocols with the following antibodies: anti-Nestin (Chemicon), anti-Ki67 (DAKO), anti-ALDH1 (BD Transduction Labs) or anti-H3K27M (Sigma Aldrich) and developed with a biotinylated-secondary antibody by a peroxidase HRP system (Vectastain Elite ABC Kit, Vector Laboratories) and DAB substrate (Vector Laboratories) following manufacturer’s instructions. anti-H3K27M was developed using a fluorescent-conjugated anti-rabbit IgG secondary (Alexa Fluor 594, Invitrogen). Sections were counterstained CytoSeal 60 (Thermo Scientic) or ProLong Gold Antifade Reagent (Life Technologies). Microscopy was performed with an Evos FLc microscope (Life Technologies). Quantification was performed using Image J software of three separate fields of view of three separate sections. All images were scored by 3 different raters. One-way ANOVA were performed to obtain p values for multiple comparisons from Tukey’s post-hoc tests.
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