The largest database of trusted experimental protocols

26 protocols using cyclin e

1

Western Blot Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested and lysed with ice-cold lysis buffer (50 mM Tris-HCl, pH 7.4, 100 mM 2-Mercaptoethanol, 2% w/v SDS, 10% glycerol). After centrifugation at 10000 × g for 10 min at 4°C, proteins in the supernatants were quantified and separated by 10% SDS PAGE. Western blot assay was performed using anti-WWOX, β-Catenin, Cyclin A, Cyclin D1, Cyclin E, c-myc and p21 antibodies (Abcam, USA). Protein levels were normalized to total GAPDH, using a rabbit anti-GAPDH antibody (Santa Cruz, USA).
+ Open protocol
+ Expand
2

Knockdown of MAGEC2 in Hepatocellular Carcinoma

Check if the same lab product or an alternative is used in the 5 most similar protocols
One HCC cell line (MHCC97H) was generously provided by Yuanduan Biological Co., Ltd. (Jiangsu, China). Two other HCC cell lines (SK-H-1 and HepG2) and the human liver cell line LO-2 were obtained from the cell bank of the Chinese Academy of Science (Shanghai, China). For MAGEC2 knockdown, the target sequence of the short hairpin RNA (shRNA) was as follows: 5ʹ- CCT CTT CCA CTT TGT ACT T -3ʹ (Gene ID: NM_016249). The shRNA targeting MAGEC2 (sh-MAGEC2) was cloned into pLKD-CMV-G&PR-U6-shRNA (Obio Technology, Co., Ltd., Shanghai, China). An unrelated random sequence was used as an sh-MAGEC2 negative control (sh-MAGEC2-NC). After viral transduction, MAGEC2 expression was evaluated by quantitative real-time polymerase chain reaction (qPCR) and Western blotting (WB) analyses. The primary antibodies, including MAGEC2, E-cadherin, N-cadherin, fibronectin, Slug, cleaved caspase-3, Cyclin D1, Cyclin E and Ki67, were all purchased from Abcam Co., Ltd. (Abcam, Cambridge, MA, USA) and Santa Cruz Biotechnology (Santa Cruz, CA, USA).
+ Open protocol
+ Expand
3

Senescence Markers in Sca-1+ HSPCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
To examine the expression of P53, P19, P16INK4a, P21Cip1/Waf1, cyclinD1, CDK4, CDK2, and CyclinE, which are markers of cell senescence, in freshly isolated Sca-1+ HSPCs from each group, we performed western blot analysis. Cells were lysed in buffer [20 mmol/L Tris-HCl, pH 7.5, 150 mmol/L NaCl, 1% Triton X-100, and complete protease inhibitor mixture tablets (Beyotime Institute of Biotechnology, Shanghai, China)] and centrifuged at 1,000 g for 5 min at 4°C. Protein concentrations of the cell were determined by a BCA protein assay reagent kit (Beyotime Institute of Biotechnology, Shanghai, China). The cell lysates (40 μg/well) were subjected to SDS-PAGE and transferred onto a PVDF membrane (Millipore, Bedford, MA, USA). The blotted membranes were incubated with primary antibodies to p53 (Abcam, Cambridge, UK), P19 (Abcam, Cambridge, UK), P16INK4a (ANBO, USA), P21Cip1/Waf1 (Ptglab, USA), cyclinD1 (ANBO, USA), CDK4 (Ptglab, USA), CDK2 (ANBO, USA), and CyclinE (Abcam, Cambridge, UK) or ACTB (Ptglab, USA). Corresponding horseradish peroxidase-conjugated antibodies were used as the second antibody (ZSGB-BIO, Beijing, China). The membranes were visualized using the enhanced chemiluminescence detection system (Pierce). The level of β-actin was used as an internal control. Relative intensities were quantified using Quantity One (Bio-Rad).
+ Open protocol
+ Expand
4

Honokiol's Anti-Cancer Mechanisms

Check if the same lab product or an alternative is used in the 5 most similar protocols
Honokiol was purchased from Wako (Osaka, Japan). 3-(4,5-dimethylthiazol-2-yl)−2, 5-Diphenyltetrazolium bromide (MTT), NAC, PD98059, and dimethyl sulfoxide (DMSO) were obtained from Sigma (St. Louis, MO, USA). MEM medium, fetal bovine serum (FBS), penicillin, streptomycin, and phosphate-buffered saline (PBS) were purchased from Gibco Life Technologies (Grand Island, NY, USA). Primary antibodies, including cleaved-poly (ADP-ribose) polymerase (PARP), Atg7, LC3B, p-ERK, ERK and GRP78, together with GAPDH antibodies and secondary antibodies, were purchased from Cell Signaling Technology, Inc. (Beverly, MA, USA). The broad-spectrum caspase inhibitor (z-VAD-fmk) was obtained from Millipore (Billerica, MA, USA). 3-MA was purchased from Selleckchem (Houston, TX, USA). Antibodies against caspase-3, caspase-9, Bcl-2, Bcl-xl, survivin, Cyclin D1, Cyclin E, and Cdk4 were purchased from Abcam.
+ Open protocol
+ Expand
5

Investigating Breast Cancer Cell Proliferation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human breast cancer cell line MDA231 used in this study was purchased from American Type Culture Collection (ATCC, VA) and was maintained in RPMI 1640, supplemented with 10% fetal bovine serum (FBS), penicillin (100 U/ml), and streptomycin (100 μg/ml). Exponentially growing cells were collected by trypsin-EDTA foranalyses.
Anti blood A antigen-PE was purchased from American Research Products, (#08-9434-4, MA). Anti blood H antigen (87-N) was purchased from Santa Cruz Biotechnology (sc-52369FITC, CA). APC-conjugated Annexin V and 7-AAD antibodies were purchased from BD Biosciences (San Jose, CA). Cell proliferation reagent (WST-1) was derived from Roche (#14606400, Mannheim, Germany). Fresh plasma was obtained from breast cancer patients and healthy people who had type B blood. The study protocol was approved by the Research Ethics Board of the First Hospital of Jilin University. Informed consent was obtained from breast cancer patients. The antibodies used in this study for western blot included anti-mouse β-Actin (1:2000, Abcam, UK), Cyclin D, Cyclin E, Cyclin B1 (1:1000,abcam,UK), CDK1, CDK2, E2F, Bcl-2, P53, PARP (1:1000,Santa Cruz, USA), CDK6 (1:500,Santa Cruz, USA), ATM (1:1000,EPIT MICS,UK), p-Rb (1:1000, cell signaling, USA), BAX (1:2000, Proteintech, USA), and P21 (1:200, Santa Cruz,USA).
+ Open protocol
+ Expand
6

Comprehensive Immunohistochemical Profiling of Tumor Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue microarray sections were antigen-retrieved, incubated with antibodies targeting MTAP (1:100, Proteintech), Ki-67 (1:200, abcam), MMP-9 (1:50, Epitomics), and CD31 (1:50, BD Pharmingen), and detected using the ChemMate EnVision kit. The cutoff value of < 10% cytoplasmic reactivity to define aberrant MTAP loss was previously described [22 (link)]. The scoring criteria of determining the levels of intratumoral microvessel density [18 (link)] and MMP-9 expression by H-score method [19 (link)] were as previously reported. Whole sections of xenografted specimens were stained with MTAP (1:50, Proteintech), cyclin D1 (1:100, Epitomics), cyclin E (1:20, Abcam), Ki-67 (1:200, abcam), MMP-9 (1:50, Epitomics), CD31 (1:50, BD Pharmingen), and TUNEL (Roche) for labeling apoptotic cells.
+ Open protocol
+ Expand
7

Immunoblotting of E2F1 and Cell Cycle Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
The expression of E2F1 protein in GC cells was detected by performing immunoblotting. Cells were lysed in RIPA buffer (pH 7.4) with protease and phosphatase inhibitors (Roche, Complete Mini). Equal amount of protein was loaded onto a SDS‐PAGE gel and transferred to PVDF membrane. The membrane was probed with the first antibody: E2F1 (1:1000, Abcam, MA, USA), CDK6 (1:1000, Abcam), Cyclin E (1:1000, Abcam), Cyclin D1 (1:1000, Abcam) and GAPDH (1:1000, Abcam) at 4°C overnight. Then, blots were incubated with HRP‐conjugated secondary antibody (1:5000). The antibodies were detected using enhanced chemiluminescence reagent (32109; Thermo Fisher Scientific).
+ Open protocol
+ Expand
8

Comprehensive Protein Extraction and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total proteins were extracted for 60 min on ice in RIPA buffer (Thermo Scientific, USA) containing protease and phosphatase inhibitors (Cell Signaling Technology, USA). Cell lysates were centrifuged at 1.2 × 104 g, 4 °C for 15 min, and the concentrations of supernatants were detected with a BCA Protein assay kit (Thermo Scientific, USA). 30 μg protein was separated by 10% SDS-PAGE (Life Technology, USA) and then transferred to 0.45 μm PVDF membranes (Millipore, USA). The membranes were incubated with monoclonal antibodies at 4 °C for 24 h. In total, primary antibodies included those for HJURP, ERK1/2, p-ERK1/2, cyclinD1, cyclinE, p-JNK, GSK3β, p-GSK3β AKT, p-AKT (Abcam, UK), LRR1 (Proteintech, China) and p21 (Cell Signaling Technology, USA). The immunoblots were detected with a visual imaging system (Bio-Rad, USA). β-actin and GAPDH (Solarbio Life Science, China) were selected as the loading controls.
+ Open protocol
+ Expand
9

Western Blot Analysis of Apoptosis-Related Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells or tumor tissues were suspended in Laemmli Buffer (Bio-Rad Laboratory, USA). Protein concentrations were measured and normalized using the BCA Protein Assay Kit (Pierce, USA). Equal amounts of protein samples were electrophoresed by SDS-PAGE and were transferred to polyvinylidene difluoride transfer membranes (Bio-Rad Laboratory, USA). The membrane was blocked with 5% fresh nonfat milk in TBST and was incubated with specific primary antibodies in TBST overnight at 4°C. The membrane was washed 3 times with TBST and incubated with secondary antibodies for 2 hours at room temperature. Finally, the blot bands were visualized using an ECL kit (Bio-Rad, Hercules, CA). The Bcl-2, Bcl-xL, BAX, Caspase 3 and 9 antibodies were from Cell Signaling Technology (MA, USA), and the GAPDH, c-Myc, Cyclin D and Cyclin E antibodies were from Abcam (Cambridge, UK); the goat IgG-HRP secondary antibodies against rabbit and mouse were from Zhongshan Golden Bridge Biotechnology (Beijing, China).
+ Open protocol
+ Expand
10

Protein Expression Analysis with Antibodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysis was performed using a total protein extraction buffer (Beyotime, Shanghai, China) and protein concentration was measured using a BCA Protein Assay Kit (Pierce Biotechnology). Cell lysates were separated by 6–12% SDS-PAGE and transferred to a PVDF membrane. After blocking with 5% skimmed milk, the membrane was probed with one of the following primary antibodies: GRINA (1:1000, ABGENT, AP13558c), β-ACTIN (1:1000, Servicebio, GB13001–3), Bcl-2 (1:1000, Cell Signaling Technology, #4223), Bax (1:1000, Cell Signaling Technology, #5023), Cleaved-caspase3 (1:1000, Cell Signaling Technology, #9664), Cleaved-caspase7 (1:1000, Cell Signaling Technology, #8438), Cleaved-caspase9 (1:1000, Cell Signaling Technology, #9505), Cyclin D1 (1:10000, Abcam, ab134175), Cyclin E (1:1000, Abcam, ab3927), Akt (1:1000, Cell Signaling Technology, #4685), p-Akt (1:2000, Cell Signaling Technology, #4060), P70S6K (1:1000, Cell Signaling Technology, #9202), p-P70S6K (1:1000, Cell Signaling Technology, #9204), 4EBP1 (1:1000, Cell Signaling Technology, #9644), p-4EBP1 (1:1000, Cell Signaling Technology, #2855), AMPK (1:1000, Cell Signaling Technology, #2532), p-AMPK (1:1000, Cell Signaling Technology, #2535), and respective species-specific secondary antibodies (ThermoFisher Scientific). The bound secondary antibodies were detected using the Odyssey imaging system (LI-COR Biosciences, Lincoln, NE).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!