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717 protocols using cytochalasin d

1

Phagocytosis Assay with Fluorescent Beads

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WT and Tmem206/ BMDMs were seeded on coverslips for assessing phagocytosis in situ. The day after, yellow-green fluorescent beads (Fluoresbrite carboxylated microspheres, Polyscience, 17147-5 and 18141-2) of 3 or 6 µm diameter were diluted in complete DMEM and applied onto cells for 30 min at 37 °C. When using cytochalasin D (Sigma, C8273), cells were first pre-treated for 1 h with cytochalasin D at 10 µM and beads were then diluted in complete DMEM with 10 µM cytochalasin D. After incubation, cells were washed twice with warm complete medium and fixed with 4% PFA. Cells were finally permeabilized to stain nuclei with DAPI (Sigma-Aldrich, MBD0015). About ten images per condition were randomly acquired with a confocal microscope with a 63× NA 1.4 oil-immersion lens (LSM880, Zeiss), and beads present inside the cells were counted manually using Fiji software.
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2

Cytoskeletal Disruption Impact on Trophoblast

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Explants (n=6) were cultured in 20% O2 and treated after 24h with the following cytoskeletal disruptors, all from Sigma: cytochalasin D (actin polymerisation inhibitor), nocodazole (microtubule polymerisation inhibitor), paclitaxel (microtubule stabiliser) at 0.1mM, 1mM or 10mM or with solvent control (0.2% dimethyl sulfoxide (DMSO)) for 20h before washing and culturing the explants for a further 48h; treated explants were weighed and fixed at d4.
To assess SNC stability in cells, primary trophoblasts were cultured with EGF for 72h and then treated for 6h with either 10μM nocodazole, 1μM cytochalasin D, or both nocodazole and cytochalasin D. Control cultures were treated with 0.2% DMSO. Additional experiments were conducted to examine whether SNC formation was inhibited by culturing primary trophoblasts for 40–42h before 18h treatment with drugs or control at the same concentrations as the other trophoblast experiments. After cytoskeletal disruptor treatments, primary trophoblasts were fixed for imaging.
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3

Quantifying Parasite Transfer Between Cells

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To assess parasite transfer between parasite-exposed cells and naive cells, B cells or macrophages were isolated or differentiated from both wild-type C57BL/6 mice expressing CD45.2 and from CD45.1 congenic mice as described above. The cells were seeded in 24-well plates at a concentration of 1 × 106, and the wells containing cells from one allelic variant were exposed to PKH67-labeled LV9 amastigotes for 1 h for B cells or overnight in the case of macrophages, thoroughly washed using sterile PBS for a minimum of three times until there was no presence of free parasite visible under the microscope, and then further incubated with naive cells of the other allelic variant for 2.5 or 5 h before preparation of samples for flow cytometry or confocal microscopy. For experiments using cytochalasin D, the parasite-exposed cells were treated with 1 or 10 μM cytochalasin D (Sigma) for 1 h before further coincubation with the initially nonexposed cells of the other allelic variant for 2.5 or 5 h. The absence of free parasites in the supernatant was further investigated by subjecting naive cells to the supernatants of exposed cells after washing.
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4

Quantification of Melanosome Uptake

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After preliminary experiments to determine cell toxicity (Supplementary MaterialsFigure S2), final concentrations of cytochalasin D (Sigma-Aldrich), an inhibitor of actin polymerization, were employed at 0.25, 0.5 and 1 µM. Each concentration of cytochalasin D was incubated in the culture medium 30 min before the addition of secreted melanosome clusters [43 (link)]. After 2 days of incubation, the cells were washed twice with D-PBS and were harvested by trypsinization. The cells were centrifuged and the contents of internalized secretory melanosome clusters adjusted per cell number were measured spectrophotometrically [13 (link)].
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5

Investigating α-Synuclein Uptake Mechanisms

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ATTO-550-labeled α-Synuclein monomer was prepared as previously described [12 (link)]. 1-methyl-4-phenylpyridinium (MPP+), the active metabolite of the neurotoxin 1-methyl-4-phenyl-1,2,5,6-tetrahydropyridine (MPTP), was purchased from Sigma and prepared as 10 mM stock in dimethyl sulfoxide (DMSO, FUJIFILM Wako Pure Chemical). Cultured neurons were either treated or not treated with 1 μM ATTO-550-labeled α-Synuclein monomer and 10 μM MPP+ for 48 h. To examine the sensitivity of FABP3-dependent uptake of α-Synuclein to cytochalasin D, which is an inhibitor of pinocytosis [23 (link)], we exposed cultured mesencephalic neurons to 2 μM cytochalasin D (Merck, Sigma-Aldrich, St. Louis, MO, USA).
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6

Quantifying Parasite Transfer Between Cells

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To assess parasite transfer between parasite-exposed cells and naive cells, B cells or macrophages were isolated or differentiated from both wild-type C57BL/6 mice expressing CD45.2 and from CD45.1 congenic mice as described above. The cells were seeded in 24-well plates at a concentration of 1 × 106, and the wells containing cells from one allelic variant were exposed to PKH67-labeled LV9 amastigotes for 1 h for B cells or overnight in the case of macrophages, thoroughly washed using sterile PBS for a minimum of three times until there was no presence of free parasite visible under the microscope, and then further incubated with naive cells of the other allelic variant for 2.5 or 5 h before preparation of samples for flow cytometry or confocal microscopy. For experiments using cytochalasin D, the parasite-exposed cells were treated with 1 or 10 μM cytochalasin D (Sigma) for 1 h before further coincubation with the initially nonexposed cells of the other allelic variant for 2.5 or 5 h. The absence of free parasites in the supernatant was further investigated by subjecting naive cells to the supernatants of exposed cells after washing.
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7

Integrin Modulation in Single-Cell Force Spectroscopy

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For SCFS in presence of a β1 integrin blocking antibody (clone AIIB2, DSHB) or β1 integrin activating antibody (clone 12G10, ab30394, abcam) cells were incubated with a 1:100 (vol/vol) dilution (in SCFS medium) for at least 30 min prior to the experiments in SCFS medium. For cell–ECM SCFS AIIB2 was present throughout the experiments at a 1:1000 (vol/vol) dilution in SCFS medium. For cell–cell adhesion experiments 12G10 was present throughout the experiments at a 1:1000 (vol/vol) dilution in SCFS medium. For SCFS in the presence of Mn2+ or EGTA, suspended cells were incubated with 0.5 mM MnCl2 or 7.5 mM EGTA in SCFS medium for at least 30 min and the chemicals were present throughout the experiments. For inhibition of RhoA cells were incubated with 0.5 µg ml–1 Rho inhibitor I (# CT04, Cytoskeleton) in the culture flask for 4 h prior to their detachment. The inhibitor was present during the recovery of the detachment and during SCFS. For cytochalasin D, suspended cells were incubated with 0.1, 0.5, or 1 µM cytochalasin D (C8273, Sigma Aldrich) in SCFS medium for at least 30 min prior to the experiments. The inhibitor was present throughout the experiments.
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8

Evaluating Sperm Vesicle Shuttle in CB1-/- Mice

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Vesicle shuttle experiments were carried out as previously reported 6 (link). In brief, caput epididymis from WT (n=5) and CB1-/- (n=5) mice were separately pulled in PBS (pH 7.6) and cut to let SPZ flow out from the ducts. Then, caput SPZ samples were filtered throughout cheesecloth to eliminate fragments of epididymal tissue and centrifuged at 1500 × g for 30 min at 4°C. The resulting caput fluid was further clarified via centrifugation (16000 × g for 30 min at 4°C) with the supernatant yielding the ELF. The resulting caput SPZ pellet and caput ELF were used for in vitro treatments as follows.
For each experimental group, 10 × 106 of WT SPZ from caput epididymis were incubated for 15 min at 37°C in 1 ml of: 1) WT Caput ELF (CTRL group); 2) WT Caput ELF combined with Cytochalasin-D (C8273; Sigma-Aldrich, Milano, Italy) at the concentration of 10 μM; 3) CB1-/-Caput ELF; 4) CB1-/-Caput ELF combined with Cytochalasin-D 10 μM. After treatment, SPZ were centrifuged at 1500 × g for 20 min at 4°C and washed twice with PBS. Sperm pellets were stored at -80°C for RNA extraction and dried on slides to be finally stored at -20°C for immunofluorescence analysis.
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9

Cytoskeleton Role in Staphylococcus Uptake

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To study the role of the human cell cytoskeleton in S. aureus uptake and provide evidence for phagocytosis, human THP1 macrophages were incubated with 2.5 and 5 μg/ml cytochalasin D (Sigma) for 60 min at 37°C before S. aureus interaction and also during the experiment. Human THP1 macrophages were infected with S. aureus and phagocytosis was carried out for 2 h at 37°C, 5% CO2, in RPMI 1640 medium. Phagocytosis was stopped by putting the plates on ice and washing the cells three times with ice-cold PBS. The remaining non-phagocytosed bacteria were killed by adding 100 μg/ml gentamycin (Sigma) and cytochalasin D (1 to 2.5 μg/ml, Sigma) in the medium for 60 min, at 37°C, 5% CO2. Subsequently, the medium was removed from each well, the cells were washed with PBS and cold distilled water was added to lyse the cells by repeated pipetting. The lysates were plated, in various dilutions, on BHI agar plates and incubated overnight at 37°C to determine the number of intracellular bacteria.
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10

Isolation and Characterization of Cytoskeletal Proteins

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Ficoll-Paque was obtained from Pharmacia (Uppsala, Sweden). Fibronectin was from Calbiochem (La Jolla, San Diego, CA, USA). Bicarbonate-free Hank’s solution, Ca2+-free Dulbecco PBS, cytochalasin D, minoxidil, doxycycline, wortmannin, Akt 1/2 inhibitor, cytochalasin D, latrunculin A, blebbistatin, staurosporine, 4-bromophenacyl bromide, and E64 were obtained from Sigma (Steinheim, Germany). Analytical chromatography conditions: eluent MCI Buffer L-8800-PH-1–4 and ninhydrin coloring solution kit for Hitachi 29,970,501 (Wako Chemicals, North Chesterfield, VA, USA). Coomassie Brilliant Blue G-250 was obtained from Serva, PMSF from MP Biomedical, trypan blue from Fluka AG, trypsin from Promega, glutaraldehyde from Ted Pella, carboxy-H2DCF-DA from Molecular Probe, (Eugene, OR, USA).
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