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6 protocols using ab182973

1

Quantifying Kidney and Plasma Proteins

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Kidney proteins were extracted as recently described (Zwischenberger et al., 2021 (link)). Plasma proteins were used directly from obtained plasma. The protein concentration of each sample was evaluated by DC Protein Assay (BioRad) according to the manufacturer’s protocol. Proteins (10 μg per lane) were resolved by SDS-PAGE gel electrophoresis using TGX stain-free gradient (4%–15%) gels, visualized using stain-free technology (ChemiDoc MP Imaging System, BioRad) and transferred to polyvinylidene difluoride (PVDF) membranes (Trans-blot Turbo Transfer System, BioRad). The membranes were blocked for 1 h in 3% nonfat dry milk at room temperature and incubated with primary antibody in 1% nonfat dry milk overnight at 4°C. HRP-linked secondary antibody incubation (anti-rabbit IgG at 1:5000, HAF008, R&D, and anti-mouse IgG at 1:5000, sc-2005, Santa Cruz Biotechnology) was performed for 1 h at room temperature followed by chemiluminescence detection (Clarity Western ECL Substrate, BioRad). Primary antibodies were as follows: Rabbit anti-mouse PAI-1 (1:1000, ab182973, Abcam), rabbit anti-mouse NGAL (1:1000, ab63929, Abcam), and mouse anti-fibrin clone 59D8 (1:1000, MABS2155, Millipore Sigma). Densitometry analysis was performed on the resulting blots using Image Lab software and bands were normalized for total protein content of each lane.
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2

Western Blot Analysis of Immune Markers

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Protein was extracted as recently described (Zwischenberger et al., 2020). Protein isolates (5–10 μg) were resolved by SDS-PAGE electrophoresis (Bio-Rad Mini PROTEAN Tetra system) using TGX stain-free gradient (4–15%) gels, total protein was visualized using stain-free technology (ChemiDoc MP imaging system), and proteins were electrophoretically transferred (Bio-Rad Trans-blot Turbo Transfer System) to polyvinylidenedifluoride (pvdf) membranes. The membranes were blocked for 1 hr in 3% non-fat dry milk at room temperature, and incubated in primary antibody in 1% non-fat dry milk overnight at 4°C. HRP-linked secondary antibody incubation (Santa Cruz #SC-2004, 1:10,000 dilution) was conducted for 1 hr at room temperature, and the reaction was detected by chemiluminescence (Bio-Rad Clarity Western ECL Substrate). Primary antibodies were as follows: anti-PAI-1 antibody (Abcam ab182973, 1:5,000), anti-CD45 (Abcam, ab10558, 1:1,000), anti-CD11b (Abcam ab133357, 1:1,000), anti-CD3 (Abcam ab16669, 1:500), anti-CD31 (Invitrogen PA5-16301, 1:500), anti-CD34 (Invitrogen PA5-89536, 1:500). Densitometry analysis was performed on the resulting blots using Image Lab software, and normalized by total protein analysis.
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3

Quantitative Western Blot Analysis

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Protein expression levels were determined by western blotting using SDS‐PAGE as described.18 In brief, total protein was isolated by lysing frozen LV tissue in RIPA buffer supplemented with 10 μM 1,4‐dithiothreitol (Sigma‐Aldrich) and protease/phosphatase inhibitor cocktail (Roche Diagnostics) on ice. For SDS‐PAGE, 50 μg protein was loaded and blotted to a nitrocellulose membrane after separation. The following primary and secondary antibodies were used: ANKRD1 (dilution 1:1000; Santa Cruz Biotechnology, Inc., sc‐365056), PAI‐1 (dilution 1:1000; abcam, ab182973), and donkey anti‐rabbit IgG, peroxidase‐linked species‐specific whole antibody NA934V (dilution 1:3000; GE Healthcare). Chemiluminescence detection was carried out after incubation with enhanced chemiluminescence reagents (PerkinElmer) using the ChemiDoc™ MP system (Bio‐Rad). Image LabV5.0 software (Bio‐Rad) was used for quantification.
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4

Quantification of Serpine1 in Cardiac Cells

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Proteins isolated from cultured cardiac myocytes and mouse hearts were determined by Western blot analysis. Equal amounts of protein were subjected to SDS-PAGE. A standard Western blot analysis was conducted using serpine1 antibody (1:1,000 dilution; ab182973, Abcam). β-Tubulin antibody (1:2,000 dilution; 2128S, Cell Signaling Technology) was used as the loading control. A cooling charged coupled device (CCD) imaging apparatus (Tanon-5200) was used for image capture.
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5

Protein Expression Analysis in Cells

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Total proteins were extracted from cells using RIPA buffer (Beyotime Institute of Biotechnology). The proteins were separated by 10% SDS‒PAGE and transferred to a PVDF membrane (EMD Millipore). The membrane was blocked with 5% fat-free milk and incubated with primary monoclonal rabbit anti-ETV7 (1:1000, ab229832, Abcam), mouse anti-ETV7 (1:500, E-1, Santa Cruz), rabbit anti-BATF2 (1:500, 1B11, Santa Cruz), rabbit anti-PAI-1 (1:500, ab182973, Abcam), rabbit anti-phospho-ERK1/2 (1:1000, 4370, CST), rabbit anti-ERK1/2 (1:1000, 4695, CST) and mouse anti‐GAPDH (1:3000, TA-08, ZSGB-BIO) for immunoblotting. The ECL detection system (EMD Millipore) was used to assess protein expression. GAPDH was used as the internal control. The experiments were conducted in triplicate.
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6

Evaluating Protein Expression in BEAS-2B Cells

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For protein analysis, BEAS-2B cells were plated in 6 well culture dishes and treated with either MWCNT (5 μg/mL) and/or TGF-β for 72 h. Cells were lysed with RIPA buffer containing HaltTM Protease and Phosphatase inhibitor cocktail (Cat#: 78440, Thermo Fischer Scientific, Waltham, MA, USA). Protein concentrations were measured in whole cell lysates by Pierce BCA Protein Assay Kit (Cat#: 23225, Thermo Fischer Scientific, Waltham, MA, USA). Total protein (20 µg) was resolved in a gradient SDS-PAGE gel and transferred to a nitrocellulose membrane. The membrane was incubated with anti-Fn (ab2413, 1:1000, Abcam), anti-PAI-1 (ab182973, 1:1000, Abcam), anti-p21 (ab109199, 1:1000, Abcam), anti-p16 (ab211542, 1:1000, Abcam), anti-γH2A.X (ab2893, 1:1000, Abcam), anti-H2A.X (ab11175, 1:1000, Abcam), anti-E-cadherin (ab11472, 1:1000, Abcam), and anti-vimentin (ab92547, 1:1000, Abcam) primary antibodies overnight at 4 °C. Membranes were incubated with HRP-conjugated secondary anti-rabbit (Cat#1706515, 1:5000, BioRad, Hercules, CA, USA), or anti-mouse (Cat#: 1706516 1:5000, BioRad, Hercules, CA, USA) for chemiluminescence detection using the Bio-Rad ChemiDoc MP imaging system. Image Lab software (v4.1, BioRad, Hercules, CA, USA) was utilized for densitometric quantification of band intensities.
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