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38 protocols using cd45 30 f11

1

Comprehensive Murine Lung Cell Analysis

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Whole lungs were removed and chopped with razor blades, incubated with type IV collagenase (Worthington) at 37 °C for 40 min, then homogenized through a 70-µm cell strainer (Falcon). Remaining red blood cells were lysed using 1× red blood cell lysis buffer (BD Biosciences). Cells were stained with Fixable Viability Dye eFluor® 455 (eBioscience). Anti-mouse immunophenotyping antibodies were diluted in FACS buffer (3% FBS, 2 mM EDTA, 1× PBS) to 5 µg per mL along with Fc block (anti-mouse CD16/CD32; 5 µg per mL, BD), and cells were stained for 30 min on ice in three groups (AMφ: CD45 (30-F11; BD), CD11c (HL3; BD), CD11b (M1/70; BD), and Siglec-F (E50-2440; BD); monocyte and neutrophil: Ly-6C (AL-21; BD), Ly-6G (1A8; BD), and CD11b (M1/70; BD); dendritic cell: CD45 (30-F11; BD), CD11c (HL3; BD), CD11b (M1/70; BD), MHC II (M5/114.15.2; BD), and CD103 (M290; BD); NK cells: CD3 (17A2; BD), NK-1.1 (PK136; BD), and CD49b (DX5; BD)). After the staining, cells were washed twice with FACS buffer and then fixed in 2% para-formaldehyde in FACS buffer for 15 min. Cell numbers were counted using AccuCount Fluorescent Particles (Spherotech). All data were collected on an LSR II flow cytometer (BD) and analyzed using FlowJo software.
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2

Liver Tissue Histopathology and Immunohistochemistry

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Liver tissues were fixed overnight in 10% formaldehyde and were embedded in paraffin. Slides were stained with H&E, Masson's Trichrome, or Picric acid-Sirius red. For immunohistochemical analysis, paraffin-embedded or frozen sections were incubated with antibodies against mouse CD45 (30-F11; BD Bioscience), CD68 (KP1; Abcam), MPO (Rabbit polyclonal; Abcam), Dectin-1 (R1-8g7; Invivogen), PCNA (PC10; Biolegend), TLR4 (Rabbit polyclonal; Abcam), α-SMA (1A4; Abcam), Phalloidin (Cell Signaling), or M-CSF (Rabbit polyclonal; Abcam). Human liver sections were stained with an antibody against Dectin-1 (Rabbit polyclonal; Abcam) or CD11b (M1/70; Biolegend). Quantification was performed by examining 10 high powered fields (HPFs) per slide. Fibrosis was quantified based on Trichrome staining using a computerized grid as described (Ochi et al., 2012a (link)). Immunofluorescent imaging was performed using a LSM 700 confocal microscope and an Axiovert camera (Zeiss).
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3

Kidney Histology and Scoring Protocol

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Mice were euthanized by CO2 exposure followed by cervical dislocation. Kidneys were surgically removed, fixed in buffered formalin, embedded in paraffin, sectioned, and stained with either periodic acid-Schiff (PAS), Hemotaxylin and Eosin (H&E) or CD45 (30-F11, BD Pharmingen; performed by Histotec, Hayward, California, USA). The slides were scored in a blinded fashion by one of the authors (JF) according to NIH kidney scoring (Supplementary Table 1), both for acute and chronic disease indices.
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4

Antibody Characterization for Vascular Research

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Antibodies directed against mouse CD31 (PECAM-1) (affinity purified SL-4), raised in rabbit and purified as described elsewhere 20 (link). Rat monoclonal antibodies against mouse CD31 [clone: MEC13.3] (Cat No. 550274), CD45 [30-F11] (Cat No. 550539), CD11b [M1/70] (Cat No. 550282), Mac3 [M3/84] (Cat No. 550292), and VE-cadherin (VEC) [11D4.1] (Cat No. 550548) were purchased from BD Biosciences (San Jose, CA, USA). Rabbit polyclonal antibodies against Ki67 (Cat No. ab15580) were purchased from Abcam (Cambridge, MA, USA). Rabbit monoclonal antibodies against Survivin [71G4B7] (Cat No. #2808), YAP [D24E4] (Cat No. #8418), and phospho-YAP (Ser127) [D9W2I] (Cat No. #13008) (P-YAP) were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). A mouse monoclonal antibody against glucose transporter 1 (GLUT-1) [SPM498] (Cat No. ab40084) was purchased from Abcam (Cambridge, MA, USA). Mouse monoclonal antibodies against human CD31 [JC70A] (Cat No. M0823), a CD45 [2B11+PD7/26] (Cat No. M0701) and a monoclonal mouse anti human CD68 were purchased from DAKO. Rabbit polyclonal antibodies against human Ajuba (Cat No. HPA006171) were purchased from Sigma-Aldrich (Saint Louis, MO, USA). A rabbit polyclonal against human GLUT1 was purchased from Cell Marque (Rocklin, CA).
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5

Immune Cell Profiling in Neuroinflammation

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Single-cell suspensions isolated from either, brain, BS, spleen, or cervical lymph nodes (CLN) were blocked with a 10% mixture of normal mouse, rat and horse serum, and rat anti-mouse CD16/32 (2.4G2, BD PharMingen) for 15 min prior to incubation with antibodies (Abs) to determine cell surface expression of various markers. Phycoerythrin (PE), FITC, and allophycocyanin-conjugated Abs specific for F480 (BM8), CD11b (M1/70), CD8 (53-6.7), and CD4 (RM4-4) were obtained from eBioscience (San Diego, CA). FITC, PE, and PerCP-conjugated Ly6-G (1A8), Ly6-C (AL-21), and CD45 (30-F11) were obtained from BD PharMingen (San Jose, CA). All isotype controls were obtained from eBioscience. To determine cell surface expression, antibody-labeled cells were acquired on a BD Fortessa Analyzer (BD Biosciences, San Jose, CA) and flow cytometry analysis was performed using FlowJo software (Tree Star Inc.). Doublets were excluded from live cell populations. CD45 was used to distinguish bone marrow-derived CD45high leukocytes, from CD45int CD11b+ microglia and CD45neg neural/glial cells. Leukocyte subsets, calculated as a fraction of the live CD45high-infiltrating population in the BS, were expressed as percentages.
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6

Pancreatic Lymph Node Cell Profiling

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Dissociated cells from pancreatic lymph nodes were suspended in buffer containing 2% FBS in PBS. To stain for surface antigens, cells were incubated with specific antibodies to F4/80 (BM-8, Biolegend), CD11c (HL3, BD Pharmigen), CD4 (RM4–5, Biolegend), CD45 (30- F11, BD Biosciences), CD8a (53–6.7, eBioscience), CD80 (16-10A1, Biolegend), CD274 (10F.9G2, Biolegend), CD86 (GL-1, Biolegend), and MHC-II (M5/114.15.2, Biolegend) or the appropriate isotype controls for 30 min. For the intracellular staining, cells were stimulated with 100ng/mL PMA (Sigma Aldrich), 500ng/ml Ionomycin (Sigma Aldrich), and Golgi Stop Plug (BD Pharmigen, 1/1000). After stimulation, cells were first stained for surface antigens, then fixed and permeabilized with BD Cytofix/Cytoperm™ (BD Pharmigen), according to the manufacturer’s recommendations. Cells were then incubated with specific antibodies to TNF-α (MP6-XT22, Biolegend), IL-1β (NJTEN3, Thermo Fisher Scientific), IL-17 (TC11-18H10, BD Pharmigen), IFN-γ (XMG12, BD Pharmigen), and FoxP3 (MF23, BD Pharmigen). After staining, the cells were washed, filtered, and analyzed on a FACS Canto II cytometer (BD). Data were analyzed using FlowJo software (Tree Star).
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7

Endothelial Cell Isolation from Ovaries

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Twenty-five micrograms of VE-Cadherin (BV13, Biolegend San Diego, CA)-Alexa Fluor 647 was injected retro-orbitally under anesthesia 8 min prior to sacrifice and organ harvest. For flow sorting, ovaries were minced and incubated with Collagenase A (25 mg/ml), Dispase II (25 mg/ml), and DNase (250 μg/ml) (Roche) at 37 °C for 20–30 min to create a single cell suspension. Cells were filtered through a 40 μm filter immediately prior to analysis. Post digestion staining was performed with CD31 and non-endothelial antibodies CD45 (30-F11, BD Pharmingen), rat and mouse IgG (Jackson Laboratories, Farmington, CT). All flow cytometry was performed on a LSRII SORP. All flow sorting was performed on an AriaII SORP. Data analysis was done with BD FACS Diva software (Becton Dickenson). Antibody captured beads were used to calculate compensation (BD Pharmingen). FSC-H vs. FSC-W and SSC-H vs. SSC-W were analyzed to exclude cell doublets. All manufacturers recommended quality control tests were performed immediately prior to sorting.
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8

Murine Immune Cell Profiling by Flow Cytometry

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Cells were released from culture plates using TrypLE and were stained after Fc-block (Invitrogen) with a panel of directly fluorochrome-conjugated mAbs against the following murine molecules (clone; source): Axl (R&D; Minneapolis, MN); CD4 (L3T4; eBioscience; San Diego, CA); CD8 (CD8b.2; Biolegend; San Diego, CA); CD11b (M1/70; eBioscience); CD11c (N418; eBioscience); CD19 (MCA1439F; AB Serotec); CD44 (IM7; eBioscience); CD45 (30-F11; BD); CD80 (16-10A1; BioLegend); CD206 (C068C2; BioLegend); Ly6C (AL-21; BD); Ly6G (1A8; BD, Franklin Lakes, NJ); Mertk (R&D). Experiments were performed on an LSR II flow cytometer and data were analyzed as previously described (25 (link)).
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9

Ex Vivo T Cell Functionality Analysis

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To determine ex vivo T cell functionality from tumor-bearing mice, single cell suspensions from spleen and tumor were obtained and activated in vitro30 (link). Briefly, mononuclear cells were restimulated with 1X Cell Stimulation Cocktail (eBioscience) in the presence of Golgiplug and Golgistop (BD) according to manufacturer’s instructions in T cell media. 4–5 hours later, cells were stained with live/dead ghost dye at 1:500 (Tonbo) and the following antibodies at diluted in FACs buffer at 1:200 against CD45 (30F-11, BD), CD3 (17A2, Biolegend), CD4 (RM4.5, Tonbo), CD8 (53–6.7, Tonbo), Klrg1 (2F1, eBioscience), and CD44 (IM7, Tonbo) for 30 minutes at 4°C in the dark. Cells were washed 2X in FACs buffer, fixed/permeabilized using the BD cytofix/cytoperm kit (BD) and stained with anti-IFNγ (XMG1.2, Biolegend) diluted 1:100 in perm/wash buffer for 1 h at 4°C. Cells were washed 2X in perm/wash buffer, resuspended in FACs buffer and stored overnight at 4°C in the dark. Cells were acquired the following day on a Fortessa 1770 flow cytometer following the addition of counting beads (Sigma) and analyzed using FlowJo software (version 10).
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10

Quantification of Brain Immune Cells

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Mice were transcardially perfused with PBS and brains were removed and subjected to enzymatic digestion using the Neural Tissue Dissociation Kit (P) (Miltenyi Biotec, Auburn, CA). Myelin debris was removed with myelin removal beads II (Miltenyi) and cells were labeled with fluorescence-labeled CD11b (M1/70) (Biolegend, #101218), CD45 (30-F11) (BD # 553079), and Ly6G (Biolegend, #127618) antibodies. Microglia (CD11bhighCD45med), macrophages (CD11bhighCD45highLy6Glow), neutrophils (CD11bhighCD45highLy6Ghigh), and lymphocytes (CD11blowCD45high) were quantitated by FACS as previously described [29 (link)].
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