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5 protocols using 3 3 cholamidopropyl dimethylammonio 1 propane sulfonate

1

Enzyme Isolation and Lipid Preparation

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Restriction endonucleases and DNA-modifying enzymes were purchased from New England BioLabs, Inc. (Ipswich, MA). Soybean phosphatidylcholine was obtained from Avanti Polar Lipids, Inc. (Alabaster, AL). 3-[(3-Cholamidopropyl)-dimethylammonio]-1-propane sulfonate and other reagents were purchased from Sigma (St Louis, MO).
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2

CD1b Lipid Loading and TCR Purification

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For tetramers, 20 μg CD1b monomers obtained from the National Institute Health (NIH) tetramer facility were loaded with 32 μg PG (Avanti lipids), GMM (Bill and Melinda Gates Foundation Lipid Bank) or synthetic BbGL-II (a gift from J. Kubler-Kielb, NIH). Lipids were dissolved in citrate buffer pH 4.5 with 0.5% 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (Sigma) and incubated overnight at 37°C. After incubation the pH was neutralized by adding Tris pH 8.5. As negative control CD1b monomers were treated in the same way without adding exogenous lipids lipid, so they carry endogenous (CD1b-endo) lipids from the expression system. CD1b mutants and wild type control for experiments using these mutants, were produced in HEK293 S GnTI (American Type Culture Collection) and purified via HisTrap Metal chelating-Ni2+ affinity chromatography and size exclusion. For SPR, purified CD1b was loaded with a molar excess of C36 GMM (Bill and Melinda Gates Foundation lipid bank) over a 16 h incubation period at 20°C and purified by anion exchange chromatography. Recombinant PG10 and clone 2 TCRs were cloned into the pET30a vector and expressed in Escherichia coli BL21(DE3) as insoluble inclusion bodies, refolded in 20 mM Tris-HCl (pH 8.0), 5M urea, 400 mM L-arginine, 0.5 mM Na-EDTA, 5 mM reduced glutathione, and 0.5 mM oxidized glutathione for 3 days at 273 K, and purified.
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3

Comprehensive Protein Extraction and Separation

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All reagents used were HPLC grade or electrophoresis grade. Albumin, from bovine serum (BSA), urea, thiourea, 3-[(3-Cholamidopropyl) dimethylammonio]-1- propanesulfonate (CHAPS), β-mercaptoethanol, glycerol 86-88%, bradford reagent, coomassie blue R-250 (CBB), DL-dithiotreitol (DTT), iodoacetamide (IAA), trypsin sequencing trifluoroacetic acid (TFA), sodium deoxycholate (DOC) and acrylamide/bis-acrylamide 30% solution (37.5:1) were purchased from Sigma-Aldrich (St. Louis, USA). (N, N, N’, N’–tetramethylethylene-diamine (TMED), ammonium persulphate (APS), glycine were purchased from NZYTech (Lisbon, Portugal). Ampholytes pH 3–10, formic acid, and ammonium bicarbonate were purchased from Fluka (Steinheim, Germany). Hydrochloride acid (HCl), glacial acetic acid, tris-base, trichloroacetic acid (TCA), sodium dodecyl sulfate (SDS), methanol, acetonitrile were purchased from Panreac (Barcelona, Spain). Bromophenol blue was from Riedel-de Haën. Agarose and Mineral oil were purchased from Biorad (Hercules, USA).
Molecular weight marker for gel electrophoresis NZYColour Protein Marker II was purchased from NZYTech (Lisbon, Portugal). α-Cyano-4-hydroxycinnamic acid puriss for MALDI-MS from Fluka was used as MALDI matrix.
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4

Polyester Dendron Conjugation Protocol

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Polyester-8-hydroxyl-1-acetylene bis-MPA dendron, 3-mercaptopropionic acid, 3-aminobenzoic acid, trityl chloride (TrCl), adipic acid dihydrazide (ADH), generation 3, 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride (EDC), N-hydroxysuccinimide (NHS), 4-dimethylaminopyridine (DMAP), 2-morpholinoethane sulfonic acid (MES), trypsin, (3-[(3-Cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS), phosphate-buffered saline (PBS), sodium cyanoborohydride (NaBH3CN), Sodium Chloride (NaCl), general solvents and reagents were purchased from Sigma. Sulfosuccinimidyl 4-[N-maleimidomethyl]cyclohexane-1-carboxylate (Sulfo-SMCC) was purchased from Thermo Fisher Scientific Inc. Fetal bovine serum (FBS) was purchased from Gibco. Factor Xa (FXa) and ATIII were purchased from Sigma.
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5

Biocompatible PVA Scaffold Characterization

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Powder PVA (MW: 7.2–8.14 × 104 g/mol) was purchased from Yingjia Industrial Development Co., Shanghai, China. Cell counting kit-8 (CCK-8) was obtained from Biosharp, Hefei, China. Phosphate buffered saline (PBS), Penicillin/streptavidin (PS), and Trypsin were purchased from HyClone, South Logan, UT, USA. 4’,6-diamidino-2-phenylindole (DAPI) fluorescent staining solution, Calcein-AM/PI Live Dead Cell Assay Kit, TRITC-Phalloidin and Tris(hydroxymethyl)aminomethane hydrochloride (TRIS-HCI) Buffer were purchased from Biyuntian Biotechnology Co., Shanghai, China. TritonX-100 solution, 3-[(3-Cholamidopropyl)-dimethyl-ammonio]-1-propane sulfonate (CHAPS), Tributyl phosphate, N-Decyl-N, N-dimethyl-3-ammonio-1-propanesulfonate (SB3-10), Amidosulfobetaine-14 (ASB-14) and Benzonase nuclease were obtained from Sigma-Aldrich, St. Louis, MO, USA.
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