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SOX10 is a transcription factor that plays a crucial role in the development and maintenance of neural crest cells, which give rise to a variety of cell types, including melanocytes, Schwann cells, and peripheral nervous system cells. SOX10 is involved in regulating the expression of genes essential for the specification, migration, and differentiation of these cell lineages.

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19 protocols using sox10

1

Investigating NFIA and Sox10 Interactions in Mouse Spinal Cord Development

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Mouse E12.5 spinal cords were dissected, dissociated, and processed for ChIP assays. The samples were pre-cleared with protein G beads and immunoprecipitated using NFIA antibody (abcam), Sox10 (rabbit-polyclonal), or control IgG (Santa Cruz). The DNA was purified and PCR was preformed using region specific primers. See supplemental information for primer sequences. HEK293 or HEK293T cell lines cells were transfected with pGL3-reporter constructs and a CMV-β-galactosidase vector using Superfect transfection reagent (Qiagen). Cells were harvested and analyzed for luciferase activity; β-galactosidase was used to normalize for transfection efficiency.
Co-immunoprecipitation was performed by transfecting P19 or Oli-Neu cells with Flag-NFIA and/or HA-Sox10; harvested cell lysates were subject to immunoprecipitation using a specific antibody or IgG control and protein G agarose beads. See supplemental information for additional information.
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2

Immunofluorescent Labeling of Brain Sections

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Free-floating sections were retrieved from cryoprotectant solution and washed 3x10 min in Tris-buffered saline (TBS, pH 7.4). The sections were then incubated in blocking solution (5% donkey serum, 1% BSA, 0.3% TritonX-100) for 1 h at room temperature. Primary antibodies were diluted in blocking solution and incubated on sections overnight at 4°C. Antibodies used: SOX10 (1:200, Santa Cruz Biotechnology), PDGFRα (1:200, Cell Signaling), CD44 (1:400, BD Pharmingen). Sections were washed in TBS, and incubated with the appropriate Alexa488 (1:400), 555 (1:400), 647 (1:200) secondary antibodies (Life Technologies) in blocking solution for 2 h at room temperature. The sections were washed in TBS 3×10 min (DAPI was included in the second wash), following by mounting with ProLong Gold antifade reagent (Life Technologies).
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3

Stilbene-Mediated Cell Apoptosis

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MLT, Ptero (trans-3,5-dimethoxy-4-hydroxystilbene;molecular weight: 256), phosphatase inhibitors, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), and β-actin were bought from Sigma Aldrich (Sigma, St. Louis, MO, USA). Also, specific antibodies for PARP and NEDD9 were purchased from Cell signaling (Cell signaling, Beverly, MA, USA), SOX9, SOX10, and Bcl-xL from Santa Cruz (Santa Cruz Biotechnology, Dallas, CA, USA) for Western blotting. TUNEL kit and protease inhibitors were purchased from Roche (Roche Molecular Biochemicals, Mannheim, Germany) for TUNEL assay.
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4

Comprehensive Analysis of Neural Markers

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The following primary antibodies were used: SOX10 (Santa Cruz, cat# sc-365692), TFAP2A (Abcam, cat# ab108311), BRN3A (Millipore, cat# MAB1585), TUJ1 (Biolegend, cat# 801201), ISL1 (DSHB, cat# 39.4D5-c), PRPH (Santa Cruz, cat# sc-377093), Actin (BD Biosciences, cat# 612656), YAP1 (Proteintech, cat# 13584-1-AP), Phalloidin-iFluor 488 (abcam, cat# ab176753). The following secondary antibodies were used: From ThermoFisher: goat anti-mouse IgG1 AF488 (cat# A21121), goat anti-mouse IgG2a (cat# A-21131), goat anti-mouse IgG2b (cat# A21242), donkey anti-rabbit AF647 (cat# A31573), donkey anti-mouse AF488 (cat# A21202), goat anti-mouse HRP (cat# 62-6520), and goat anti-rabbit HRP (cat# 65-6120). The dilutions used are indicated in each section.
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5

Western Blot Analysis of Melanogenic Proteins

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Protein extracts were prepared with RIPA buffer (iNtRON, IBS-BR001), resolved on SDS-acrylamide gels by electrophoresis and transferred to polyvinylidene difluoride membrane (Roche, 03010040001). Western blots were blocked with either 5% non-fat milk (Becton-Dickinson, 23100) or 5% bovine serum albumin (BSA, Affymetrix, 10857) in Tris-buffered saline containing 0.05% Tween 20 (Sigma-Aldrich, P1379). After washing, blots were reacted with primary antibody at 4℃ overnight followed by secondary antibody for 1 h at room temperature. Immune complex on the blots was visualized by reacting with enhanced chemiluminescence reagent (GE Healthcare, RPN2232). This study employed primary antibodies against MITF-M (Abcam, ab12039), TYR (Santa Cruz, sc-7833), p-CREB (Cell Signaling, 9198), CREB (Cell Signaling, 9197), p-CRTC1 (Cell Signaling, 3359), CRTC1 (Cell Signaling, 2587), 14-3-3 (Santa Cruz, sc-1657), p-β-catenin (Cell Signaling, 9567), β-catenin (Cell Signaling, 9562), SOX10 (Santa Cruz, sc-17342), GAPDH (Santa Cruz, sc-25778) or histone H1 (Santa Cruz, sc-8030). Secondary antibodies were rabbit anti-goat IgG labeled with horseradish peroxidase (HRP) (Thermo Fisher Scientific, A27011), goat anti-rabbit IgG labeled with HRP (Thermo Fisher Scientific, 31460), and goat anti-mouse IgG labeled with HRP (Thermo Fisher Scientific, 31430).
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6

Immunohistochemical Analysis of Tumor Samples

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Tissues were fixed in 10% formalin (VWR, Radnor, PA, 48218–700) for 24 hours at room temperature, then stored in 70% ethanol until embedding in paraffin. For immunohistochemistry, antigen retrieval was performed at 97 °C for 20 minutes using pH 6.0 citrate buffer composed of 10 mM sodium citrate and 0.05% Tween 20. The following antibodies were used for immunohistochemistry: Sox10 (Santa Cruz Biotechnology, Dallas, TX, sc-17342, 1:100), PHGDH (Sigma-Aldrich, HPA021241, 1:2000), Ki67 (BD Biosciences, Franklin Lakes, NJ, 550609, 1:40), and cleaved caspase 3 (Cell Signaling Technology, Danvers, MA 9661S, 1:300). Slides were scanned using an Aperio slide scanner (Leica Biosystems, Wetzlar, Germany), and images were analyzed using Aperio ImageScope. Ki67 and PHGDH staining was quantitated using the Positive Pixel Counter v9 in Aperio ImageScope. For Ki67, a region of each tumor measuring 1.5 mm by 0.7 mm was quantitated at 10x magnification. For PHGDH, 5 mammary glands were quantitated per mouse at 20x magnification using a color threshold of 0.1. cleaved caspase 3 staining was quantitated by scoring 300 cells per tumor as positive or negative. Samples were de-identified before all staining quantitation.
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7

Sciatic Nerve Immunohistochemistry in Mice

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The sciatic nerves of mice at defined ages were dissected and fixed for 15 min in 4% PFA in 0.1 M sodium phosphate buffer (pH 7.4), embedded in optimal cutting temperature (OCT) compound, cryoprotected in 25% sucrose, and sectioned at 12 μm as longitudinal or cross-sections using a cryostat or at 30 μm using a vibratome. Tissue sections or cells were permeabilized and blocked in blocking buffer (0.3% Triton X-100 and 5% normal donkey serum in PBS) for 1 h at 25 °C, followed by incubation with primary antibodies overnight at 4 °C. Antibodies against the following proteins were used: HDAC3 (rabbit; Santa Cruz Biotechnology, sc-11417), MPZ (rabbit; Abcam, ab31851), MBP (goat; Santa Cruz Biotechnology, sc-13914 and mouse; BioLegend, 836501), NF-M (rabbit; Millipore, AB1987), SOX10 (goat; Santa Cruz Biotechnology, sc-17342), EGR2 (rabbit; Santa Cruz, sc-20690), Ki67 (rabbit; Thermo Scientific, RM-9106), SOX2 (goat; Santa Cruz Biotechnology, sc-17320), HDAC5 (mouse; Sigma, H4538), CD31 (rat; BD Pharmingen, 553370), and CASPR (mouse; NeuroMab, 75-001). Secondary antibodies conjugated to Cy2, Cy3, or Cy5 were from Jackson ImmunoResearch Laboratories (catalog numbers 705-165-147, 705-225-147, 711-225-152, 711-165-152, 711-175-152, 715-165-150, and 712-165-150). All images were acquired using a Nikon C2+ confocal microscope.
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8

Investigating NFIA and Sox10 Interactions in Mouse Spinal Cord Development

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Mouse E12.5 spinal cords were dissected, dissociated, and processed for ChIP assays. The samples were pre-cleared with protein G beads and immunoprecipitated using NFIA antibody (abcam), Sox10 (rabbit-polyclonal), or control IgG (Santa Cruz). The DNA was purified and PCR was preformed using region specific primers. See supplemental information for primer sequences. HEK293 or HEK293T cell lines cells were transfected with pGL3-reporter constructs and a CMV-β-galactosidase vector using Superfect transfection reagent (Qiagen). Cells were harvested and analyzed for luciferase activity; β-galactosidase was used to normalize for transfection efficiency.
Co-immunoprecipitation was performed by transfecting P19 or Oli-Neu cells with Flag-NFIA and/or HA-Sox10; harvested cell lysates were subject to immunoprecipitation using a specific antibody or IgG control and protein G agarose beads. See supplemental information for additional information.
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9

Immunohistochemical Characterization of Neural Tissue

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Slides were thawed to room temperature, and lines drawn to partition the edges of sections on the glass slides using a PAPpen (ImmEdge Pen; Vector Labs H4000). The sections were rehydrated, blocked, permeabilized and immunostained with primary antibodies: PAX6 (BioLegend, 1:200), SOX2 (Santa Cruz, 1:100), β-tubulin III (Sigma, 1:1000), FOXG1 (Takara, 1:500), SOX10 (Santa Cruz, 1:100), Ki67 (Thermo Fisher, 1:200), Nestin (Millipore, 1:200), GFAP (Millipore, 1:400), S100beta (DAKO Potts, 1:400), CTIP2 (Abcam, 1:500), SATB2 (Abcam, 1:50), MAP2AB (Abcam, 1:1000-2000), NeuN (Millipore, 1:200), TBR1(Abcam, 1:500), BRN2 (Millipore, 1:500), MEF2C (Novis, 1:200), AT8 (Invitrogen, 1:1000), PHF1 (gift from Peter Davies,1:1000), Total Tau (DAKO Potts, 1:200), DA9 (gift from Peter Davies, 1:1000), ELAVL4 (Santa Cruz, 1:200), TIA1 (Santa Cruz, 1:100), G3BP1 (Protein Tech, 1:200), VGLUT1 (gift from Susan Morton, Tom Jessell, 1:16,000), Calbindin1 (Swant, 1:10,000), Homer1 (SYSY, 1:250) and Synapsin1 (Millipore, 1:100). Primary antibodies were incubated overnight at 4C, washed three times with PBS and then incubated with corresponding Alexa Fluor conjugated secondary antibody (1:333-1000) for 1 hour at room temperature. Sections were coverslipped and imaged using fluorescence and confocal microscopy (Zeiss AXIO Observer.Z1; Zeiss 780).
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10

Immunohistochemical Analysis of Mouse Brains

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Mouse brains were processed and immunostained as previously described [9 (link)–12 (link)]. In brief, mice were decapitated under isoflurane anesthesia and brains were harvested and drop fixed in 4% formaldehyde for 24 h, then transferred to graded ethanol series, embedded in paraffin, and sectioned. Eyes were processed and fixed as previously described [13 (link)]. In brief, eyes were harvested after decapitation, injected with 4% formaldehyde, and then drop fixed, embedded in paraffin, and sectioned.
Primary antibodies used were: BAK diluted 1:200 (Cell Signaling, #12105), Myelin Basic Protein (MBP) diluted 1:1000 (Abcam, #ab7349), SOX10 diluted 1:100 (Santa Cruz, #sc-17342), cleaved-Caspase 3 (cC3) diluted 1:400 (Biocare Medical, #CP229C), glial fibrillary acidic protein (GFAP) diluted 1:2000 (Dako, Z0334), PDGFRA diluted 1:200 (Cell Signaling, #3174), SOX2 diluted 1:200 (Cell Signaling, #4900S), SOX9 diluted 1:200 (R&D Systems, #AF3075), NESTIN diluted 1:500 (Cell Signaling, #4760), and IBA1 diluted 1:2000 (Wako Chemicals, #019-19741). Stained images were counterstained with DAPI, digitally imaged using an Aperio Scan Scope XT (Aperio), and subjected to automated cell counting using Tissue Studio (Definiens).
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