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12 protocols using ix2 ucb

1

Quantifying Neuronal Viability Assay

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Neuronal viability was quantified using a LIVE/DEAD viability/cytotoxicity kit (Molecular Probes). According to the manufacturer’s protocol, coverslips were stained with calcein AM and ethidium homodimer-1, which labeled live cells and dead cells, respectively. Coverslips were then quickly examined under a fluorescence microscope (Olympus IX2-UCB), and pictures were taken. Neuronal death was determined by counting from six random fields per coverslip then averaged and expressed as percentage of cell death (i.e., dead cells/total cells × 100 %). All assays were repeated in triplicate in three independent experiments.
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2

Islet Viability Assay Protocol

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To estimate effects of antioxidants on pancreatic islet survival in culture for a given time period, the viability assay was performed directly after the MitoB assay. The islets were incubated with propidium iodide and acridine orange (Thermo Fisher) for 10 min at 37°C in the dark. These solutions were added directly to the CMRL medium according to the manufacturer's instructions. The islets were then washed once with 1x PBS to wash out the excess stain. The live (green fluorescence) and dead (red fluorescence) islets were counted manually by two independent observers under the fluorescence microscope (Olympus IX2-UCB).
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3

Quantitative Analysis of Kidney Crystals

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The left kidney was fixed in 4% paraformaldehyde, dehydrated in gradient alcohol and embedded in paraffin as described by Qian et al (18 (link)). Longitudinal 4-µm paraffin sections were prepared for the H & E and Von Kossa staining. These sections were observed under the fluorescence microscope (Olympus IX2-UCB, Japan) to confirm the presence of crystals in the stained materials. The formed crystals were evaluated using professional image analysis software (ImageJ, U.S.A). Each section was photographed with 20 randomly selected fields of view under a 200× microscope. The calculations of the stone area were determined for each section using Image J software to obtain the sum of stone area under 20 fields of view and the percentage of stone area, i.e., percentage of stone area=stone arealongitudinal section area of kidney100 .
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4

Enterocyte Monolayer Imaging and Quantification

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Absorptive enterocyte monolayers were treated with vehicle or 20 umol/L etomoxir and exposed apically to B-C12 or B-C16 for 6 hours. After 6 hours of apical B-C12 or B-C16 exposure, absorptive enterocyte monolayers were rinsed with fresh DM and fixed in 40% glyoxal solution for 20 minutes. After fixation, absorptive enterocyte monolayers were rinsed with 1× DPBS. Next, the Transwell membrane containing the fixed absorptive enterocyte monolayers were removed from the Transwell inserts and placed on glass slides. Absorptive enterocyte monolayers then were overlaid with mounting media and covered with a glass coverslip. Fluorescent images used for quantification were taken at 20× magnification on an Olympus IX2-UCB (Olympus, Shinjuku City, Tokyo, Japan) microscope. Representative fluorescent images of absorptive enterocyte monolayers in Figure 5 were taken at 40× magnification on a Keyence BZ-X810 microscope (Keyance, Osaka, Japan).
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5

Flow Cytometric Analysis of Transfected Cells

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Flow cytometric analyses of the transfected HEK293, CHO, and A549 cells was performed to detect eGFP and CD39 expression. Therefore, 24 h, 72 h, 120 h, and 168 h after transfection, CD39-fluorescein isothiocyanate (FITC) antibody (Abcam, U. K.: Clone A1) was used to detect CD39 expression using a FACS Calibur (BD Bioscience, U. S. A.). A total of 10,000 events were acquired in each sample. For the analysis of eGFP expression, no antibody was necessary.
The eGFP expression of CHO cells was additionally detected via fluorescence microscopy 24 h after transfection using a fluorescence microscope (IX2UCB, Olympus, Japan). The fluorescence intensity was analyzed by measuring the grey scale of the images using ImageJ.
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6

Evaluating Cell Migration and Invasion

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Cell migration was evaluated by in vitro wound healing assay. Cells were grown to confluence in 6-well plates. Cell monolayers were scraped with a sterile micropipette tip and treated with different concentrations of FH535. The wound area was photographed by microscope (Olympus IX2-UCB) before and 24 hours after the treatment. The wound widths were measured using ImageJ.
Transwell invasion assay was carried out using 24-well Transwell chamber with an 8 µm pore size polycarbonate filter membrane (Corning). Before the assay, Matrigel (1:10 dilution, BD Biosciences) was coated in the upper chamber overnight. 1×105 cells in 200 µl RPMI 1640 with 1% FBS were incubated in the upper chamber, 900µl RPMI 1640 with 10% FBS were added in the lower chamber. After incubation for 36 hours, invaded cells were fixed by 4% PFA and stained with 0.1% crystal violet, then photographed by microscope. The results were presented as counted cells per field at 400× magnification.
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7

Critical Cranial Bone Defect Repair

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5–6 weeks old Sprague Dawlye (SD) male rats were used to create critical-sized cranial bone defect model for in vivo study. Care, housing and surgery procedure use of laboratory animals followed the protocol approved by the Animal Ethics Committee of Wenzhou Medical University (China). An 8 mm defect was made and sterilized BG-XLS, BG-XLS/GelMA-DFO and BG-XLS-BMP2 scaffolds were implanted into the cranial defects. 1 mg/mL of bone morphogenetic protein-2 (BMP2) (Peprotech, Rocky Hill, NJ, USA) solution was mixed with collagen solution (2.5 mg/mL, Bedford, MA, USA), and 1 M NaOH solution was used to adjust the pH value to 7.4. Finally, 10 μL of the collagen/BMP2 solution with 1 μg BMP2 was then incorporated into the BG-XLS scaffolds. The BG-XLS-BMP2 group was chosen as the positive control. All SD rats were euthanized after 8 weeks of implantation, followed by being fixed with 10% formalin for 2 days, then immersed in 70% ethanol for radiographic (Bruker, Billerica, MA, USA) and micro-CT (Skyscan 1076, Bruker, USA) analysis. After the μCT analysis, the decalcification process of samples was carried out in a 10% EDTA (pH = 7.4) solution for 3 weeks and the samples were then imbedded in paraffin for histological analysis. The tissue slices were cut with the thickness of 5 μm and stained with Hematoxylin and Eosin (H&E) and observed under microscope (IX 2-UCB, Olympus).
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8

Quantifying Renal Apoptosis via TUNEL

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We used a TUNEL assay kit according to the instructions of the manufacturer to assay renal apoptosis in left kidney tissues embedded in paraffin and cut into 4mm thick sections. Cells positive for TUNEL were counted in 5 randomly selected fields (400x magnification) under a fluorescence microscope (Olympus IX2-UCB, Japan). The rate of apoptotic cells was analyzed using Image J (USA).
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9

Immunohistochemical Analysis of Nitrotyrosine

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All tissues were embedded in paraffin prior to 10 micron sectioning. Histology samples were stained by hematoxylin and eosin under standard protocols. Immunohistochemistry samples were processed using an anti-nitrotyrosine primary antibody (A-21285, Life Technologies Inc., NY, USA) at 1:500 dilution, with color development according to the protocol described in the DAKO LSB+ kit. Endogenous peroxidases were quenched prior to processing. TUNEL staining was performed according to the manufacturer instructions using the ApopTag Plus Peroxidase In Situ Apoptosis Kit (EMD Millipore, MA, USA). All images were acquired using an Olympus IX2-UCB (Olympus America Inc., PA, USA) inverted fluorescence microscope equipped with a Nuance (CRi Inc., MA, USA) hyperspectral camera capable of brightfield full color imaging.
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10

Evaluating AAV9-Mediated Gene Transfer

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Frozen cardiac tissue sections were used for immunostaining to determine the transfection efficiency by checking the eGFP florescence in mice received AAV9-ALDH2-eGFP and AAV9-GFP and as well as checking the staining for ALDH2 with anti-ALDH2 mouse polyclonal antibody (Thermo Fisher Scientific Inc, MA5-17029; 1:100 and 4 °C for overnight incubation): The secondary antibodies were conjugated with Alexa fluor 546 (Invitrogen, A11030, wavelength excitation peaks at 556 nm and emission peaks at 573 nm) at a concentration of 1:500 at room temperature for 1 hour. Immunofluorescence positive staining was analyzed using a fluorescent microscope (Olympus IX81) and an image analyzer (Olympus IX2-UCB). The representative micrographs were selected and presented.
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