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8 protocols using fusion solo 7s

1

Construction and Evaluation of Plasmid pACYC-ipaBCDA

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Plasmid pACYC-ipaBCDA was constructed by inserting T3SS effector genes (identical to nucleotide sequence 79825–91466; Genbank/EBI Data Bank Accession number CP000039.1) into the BamHI site of pACYC177 in a direction opposite to that of the tet promoter [26 (link)]. The bacterial strains used are listed in S1 Table. Strains MF1632 and MS2834 were constructed as previously described [27 (link)] using the primers listed in S2 Table.
For immunization or challenge, bacterial cells were grown at 37°C in LB Lenox medium as described previously [27 (link)], concentrated by centrifugation at 3,000 × g for 5 min at 4°C, and resuspended in PBS. Immunoblotting was performed as described previously [27 (link)]. To examine protein expression at 37°C, three independent cultures of 2457T and MF4835 were harvested at the same growth phase (OD600 = 0.8), blotted onto the same membrane, and levels of IpaB and InvE were measured using a chemical luminescence-based imaging system (Fusion Solo 7S; VILBER Inc.). Values were calculated relative to those of 2457T (± the standard deviation).
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2

Chorein Western Blotting Analysis

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We performed chorein Western blotting analysis that has been previously described in detail4 ,7 (link) with minor modifications. We used polyvinylidene difluoride membranes from GE Healthcare (Little Chalfont, United Kingdom) or Merck Millipore (Carrigtwohill, County Cork, Ireland). We used 2 primary antibodies, a commercially available rabbit polyclonal antibody against chorein (NBP1-85641; Novus Biologicals, Littleton, CO) and a generated rabbit polyclonal antibody against a synthetic oligopeptide antigen corresponding to amino acid residues 1816–1830 (ESDPEEENYKVPEYK) encoded by exon 43 of the VPS13A gene (Asahi Techno Glass, Chiba, Japan). Images were recorded by digital analyzers (Fujifilm LAS-1000; Fujifilm, Tokyo, Japan, or Fusion-Solo.7S; Vilber Lourmat, Collégien, France).
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3

Western Blot Protein Extraction and Analysis

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The cells were gently scraped from the culture plates, resuspended in 1000 μL of Mammalian Protein Extraction Reagent buffer (Thermo Fisher Scientific), and shaken for 5 minutes. The samples were then centrifuged at 14,000g for 10 minutes. The supernatants were collected, and the protein concentration was calculated using a Qubit 2.0 fluorometer (Thermo Fisher Scientific). Protein extracts (30 μg per lane) were prepared, run on a 4%–20% Mini-PROTEAN TGX gel (Bio-Rad), and transferred to a 0.45 μm PVDF membrane. The membranes were blocked for 1 hour at room temperature using Blocking One (nacalai tesque), followed by incubation overnight at 4°C with the primary antibodies presented in Supplemental Table 1. Two secondary antibodies — anti-mouse IgG, HRP-linked whole Ab sheep (GE Healthcare, now Cytiva, NA931-1ML), and anti-rabbit IgG, HRP-linked antibody (Cell Signaling Technology, 7074S) — were used at a dilution of 1:5000, and the membranes were developed using ImmunoStar LD (Wako) and imaged using the FUSION Solo 7S (Vilber-Lourmat).
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4

Western Blot Visualization Protocol

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Proteins were separated in polyacrylamide gel and then transferred to polyvinylidene difluoride membranes (Millipore). These membranes were incubated with primary antibodies, followed by secondary antibodies conjugated to peroxidase. The proteins were visualized by enhanced chemiluminescence using Fusion SOLO.7S, EDGE (Vilber-Lourmat).
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5

Protein Extraction and Immunoblotting from Mouse Lungs

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Mouse lungs were lysed with lysis buffer (50 mM Tris-HCl [pH 7.5], 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, and complete EDTA-free protease inhibitor cocktail [19543200, Roche]). The supernatants were collected by centrifugation at 15,000 × g for 10 min, and the protein concentrations were adjusted using the bicinchoninic acid method (23228, Thermo Fisher Scientific). The lysates were solubilized with immunoblot sample buffer (46.7 mM Tris-HCl [pH 6.8], 1.67% sodium dodecyl sulfate [SDS], 5% glycerol, 1.55% dithiothreitol, and 0.003% bromophenol blue), subjected to SDS-polyacrylamide gel electrophoresis, transferred to an Immobilon-P polyvinylidene difluoride membrane (IPVH00010, Millipore), and blotted with antibodies. Super-Signal West Pico Chemiluminescent substrate (1856136, Thermo Fisher Scientific) was used for detection of each protein signal. Signals were captured using FUSION SOLO7S (Vilber-Lourmat). The images were processed using Photoshop CS6.
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6

Immunoblotting for Hsc70 and Hikeshi Proteins

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Cells were washed with ice-cold PBS and lysed with 2× Laemmli sample buffer. Cell lysates were subjected to SDS–PAGE and blotted onto PVDF membranes using the Trans-Blot Turbo Transfer System (Bio-Rad). After blocking with 10% skim milk/PBS containing 0.2% Tween-20, membranes were probed with primary mouse anti-Hsc70/Hsp70 (1:2,000; 1H5-1, Kose et al, 2012 (link)) and rabbit anti-Hikeshi antibodies (1:200; 20524-1-AP; Proteintech) and secondary goat anti-mouse or rabbit IgG conjugated to HRP (1:3,000; Bio-Rad) antibodies diluted in 10% skim milk/PBS containing 0.2% Tween-20. Images of chemiluminescent signals were detected and captured using ECL Western blotting detection reagents (Amersham) and FUSION Solo 7S (Vilber-Lourmat). Band intensities were measured with ImageJ software.
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7

Western Blot Analysis of Cell Lysates

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Cells were washed with ice-cold phosphate-buffered saline and then lysed in lysis buffer (1% Nonidet P-40, 50 mM Tris-HCl (pH 7.4), 150 mM NaCl) supplemented with a complete protease inhibitor cocktail tablet (Roche) and a phosphatase inhibitor cocktail tablet (Roche). Cell lysates were incubated for 15 min at 4°C, then centrifuged at 14,000 × g for 15 min at 4°C. The supernatants were boiled in 2-mercaptoethanol-containing sample buffer, subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride membrane (Millipore). The membranes were then blocked with Tris-buffered saline containing 20 mM Tris-HCl (pH 7.4), 135 mM NaCl, 0.05% Tween 20, and 5% skim milk and incubated with primary antibody at room temperature for 1 h or overnight at 4°C and then with HRP-conjugated secondary antibody at room temperature for 1 h. The immune complexes and cell lysates were visualized using a Luminata Forte Western HRP Substrate (Millipore), ImageQuant LAS-4000 (GE Healthcare), and FUSION-Solo 7S (Vilber-Lourmat).
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8

Immunoblotting of Zebrafish and HepG2 Cells

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Zebrafish embryos or HepG2 cells were lysed with lysis buffer (50 mM Tris-HCl [pH 7.5], 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 1 mM phenylmethanesulfonyl fluoride, and complete EDTA-free protease inhibitor cocktail [19543200, Roche]). After centrifugation at 15,000 × g for 20 min, the supernatants were collected, and the protein concentrations were adjusted using the bicinchoninic acid method (23228, Thermo Fisher Scientific). The lysates were solubilized with immunoblot sample buffer (46.7 mM Tris-HCl [pH 6.8], 5% glycerol, 1.67% sodium dodecyl sulfate [SDS], 1.55% dithiothreitol, and 0.003% bromophenol blue). The immunoblot samples were separated by SDS-polyacrylamide gel electrophoresis, transferred to an Immobilon-P polyvinylidene difluoride membrane (IPVH00010, Millipore), and blotted with primary and secondary antibodies. Each protein signal was detected with Super-Signal West Pico Chemiluminescent substrate (1856136, Thermo Fisher Scientific) or Immobilon Western Chemiluminescent HRP substrate (WBKLS0500, Millipore). Signal intensities were captured using FUSION SOLO7S (Vilber-Lourmat). The images were processed using Photoshop CS6 (Adobe).
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