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Sc 108060

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Sc-108060 is a laboratory equipment product offered by Santa Cruz Biotechnology. It serves as a core function for specific research applications. The detailed description of this product is not available at this time.

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55 protocols using sc 108060

1

Lentiviral Particles Production and Transduction

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Recombinant lentivirus particles were produced in HEK293T cells by transient transfection of lentivirus packaging plasmids, including 4 plasmids expressing Gag-Pol (pHDM-Hgpm2), Tat (pHDM-tat1b), Rev (pRC-CMV-rev1B), and VSV-G (pHDM VSV-G), and a pool of 3 recombinant lentiviral vectors, each encoding shRNA specific for cPLA2 (Santa Cruz Biotechnology Inc., sc-35098-SH) or scrambled shRNA (Santa Cruz Biotechnology Inc., sc-108060). Lentiviral particles packaged with LPCAT1 overexpressing plasmid were produced by co-transfection of lentivirus packaging plasmids, as described above, with pHAGE-EF1α-3xFlag vector or pHAGE-EF1α-3xFlag-LPCAT1 into HEK293T cells. For construction of pHAGE-EF1α-3xFlag-LPCAT1 plasmid, full length of LPCAT1 coding sequence was inserted into pHAGE-EF1α-3xFlag vector to generate pHAGE-EF1α-3xFlag-LPCAT1 plasmid. Cell culture media containing viruses was collected 3 times within 72 hours after transfection and concentrated by centrifugation62 (link). Concentrated virus stocks had a titer greater than 2 × 108 per ml and were stored at −80 °C before bone marrow cell (BMC) transduction. BMCs isolation and viral transductions were performed by previously described30 (link). The efficiency of lentivirus transduction was assessed by detection of GFP expression in BMCs using flow cytometry.
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2

Molecular Cloning of TRIB1 Constructs

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The TRIB1 expression plasmid was obtained from GenScript (Clone ID: OHu22886) and system biosciences (SBI) by providing custom sequence (Supplementary Methods 1). The doxycycline inducible shRNA was purchased from Dharmacon (SMARTvector Inducible Human TRIB1 mCMV-TurboRFP shRNA). The TRIB1 deletion mutant constructs were a generous gift from Dr. Takuro Nakamura (Division of Carcinogenesis, The Cancer Institute, Tokyo, Japan). TRIB1-W337A-FLAG and TRIB1-W337A-MYC plasmids were generated by mutating the MEK binding site in respective TRIB1 expression plasmids using QuikChange Lightning Site-Directed Mutagenesis Kit (Agilent technologies) according to manufacturer’s instructions. The primer sequence is indicated in supplementary methods 2. Control shRNA plasmid-A (sc-108060) and COP1 shRNA Plasmid (h) (sc-45541-SH) were purchased from Santa Cruz biotechnologies.
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3

Generating Stable Cell Lines Overexpressing ABCC10 or ABCG2

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The human ABCC10 or ABCG2 gene was inserted into the EcoRI and XbaI sites of pcDNA3.1(+) (Invitrogen, Carlsbad, CA) to make expression vectors, pcDNA3.1(+)/ABCC10 or pcDNA3.1(+)/ABCG2.
To establish ABCC10-overexpressing NSCLC cells, gefitinib-sensitive PC9 and H292 cells were transfected with pcDNA3.1(+)/ABCC10 or empty vector using LipofectamineTM 2000 (Invitrogen, Carlsbad, CA, USA). To establish NSCLC cells with ABCC10 knockdown, ABCC10 shRNA plasmid (shABCC10, Santa Cruz Biotechnology, sc-62641-SH) or control plasmid (shMock, Santa Cruz Biotechnology, sc-108060) was introduced into gefitinib-resistant NSCLC cells PC9/GR and H292/GR. Single colonies were identified in culture medium containing G418 (2 mg/mL) and subcultured for further analysis.
To establish the stably transfected LLC-PK1 cells expressing ABCC10 or ABCG2, pcDNA3.1(+)/ABCC10, or pcDNA3.1(+)/ABCG2 was transfected into LLC-PK1 cells, and stable transfected clones were selected as described above. Expression of ABCC10/ABCG2 was confirmed by quantitative real-time PCR and western blot analysis as described below.
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4

siRNA and shRNA Transfection Protocol

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All siRNA transfections were performed using Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s protocol. Briefly, 400,000 cells per well (in a 6-well plate) were transfected with 100 nM negative control siRNA (Cat# 4390843, Invitrogen, Carlsbad, CA, USA) or gene-specific siRNA in OptiMEM, which was replaced with fresh cell culture medium after 12 h. The cells were then allowed to grow for 48 h prior to any further analysis or experiment. The siRNA oligonucleotides used in this study were as follows: anti-WNT5A siRNA (Cat# s14871 and s14872), anti-IL6 siRNA (Cat# s7311 and 7312), and anti-MARCKS siRNA (Cat# s8636 and 243176) (all from Invitrogen, Carlsbad, CA, USA); and anti-PRKCE siRNA (Cat# J-004653-07-0005, Dharmacon, Horizon Discovery, Cambridge, UK).
For shRNA transfection, 1.5 µg of negative control shRNA or MARCKS-targeting shRNA plasmids was used to transfect cells in OptiMEM for 12 h. This transfection period was followed by replacement of the medium with fresh complete DMEM cell culture medium. Transfected cells were selected by 5 days of incubation with puromycin, initiated 48 h after transfection. The shRNA plasmids targeting MARCKS (sc-35858-SH) and the negative control shRNA-A (sc-108060) were obtained from Santa Cruz Biotechnology (Dallas, TX, USA).
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5

Modulating COL11A1 and SUMO-3 in Ovarian Cancer

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Small interfering RNAs (siRNAs) directed against human COL11A1 (sc-72956-SH), and a non-targeting negative control target (sc-108060) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). COL11A1 cDNA plasmid (BC117697, GE Healthcare) was cloned into a pCMV6-AC-GFP vector (PS100010, OriGene), followed by verification via sequencing. SUMO-3 (HG12782-UT) cDNA plasmid was purchased from Sino Biological (Beijing, China). miR-509-3p mimics (MC12984), mimics negative control (4464058), miR-509-3p inhibitor (MH12984), and inhibitor negative control (4,464,076) were purchased from Ambion (Foster City, CA, USA). A2780CP70 or OVCAR-8 cells were transfected with miR-509-3p mimics and SUMO-3 in combination using Lipofectamine 3000 (Thermo Fisher Scientific).
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6

HNF6 Knockdown in Hepa-1c1c7 Cells

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24 h after seeding cells, HNF6-shRNA plasmid (HNF-6 sc-37937-SH, Santa Cruz Biotechnology, USA) was used for knocking-down of HNF6, according to the manufacturer's instructions. Scrambled shRNA plasmid (sc-108060, Santa Cruz Biotechnology) was used as a negative control. Knockdown efficiency was assessed 48 h post-transfection by western blotting as well as by real time PCR. Protein of transfected Hepa-1c1c7 cells was extracted using RIPA buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1 mM EDTA, 0.1% SDS, 1% Triton X-100, 0.5% sodium deoxycholate containing protease and phosphatase inhibitors). Protein samples were subjected to electrophoresis on 10% SDS-polyacrylamide gels and transferred to a nitrocellulose (Amersham Protran Supported 0.45 NC, GE Healthcare). After blocking with 0.5% dry milk in PBS-Tween 0.1%, the membranes were probed with anti-HNF6 (1:500, Santa Cruz Biotechnology, sc-376167), and HSP90 (1:1000, Santa Cruz Biotechnology, sc-13119) antibodies overnight at 4°C. Anti-rabbit and -mouse HRP conjugated antibody was used as a secondary antibody. Detection of the immune complexes was performed using WesternBright Quantum system (Advansta, K-12042, USA) and quantification was done with the Quantity One analysis software (Bio-Rad).
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7

Silencing ZKSCAN3 in Bladder Cancer Cells

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A shRNA plasmid targeting human ZKSCAN3 (sc-95093-SH; Santa Cruz Biotechnology) or a non-silencing control shRNA plasmid (sc-108060; Santa Cruz Biotechnology) was transfected into UMUC3 and 647V, using Lipofectamine® 2000 transfection reagent (Life Technologies). Selection of stable clones was carried out with puromycin (Sigma) treatment at a concentration of 6 μg/mL, as described previously [20 (link)]. In addition, a ZKSCAN3-siRNA (#4392420; Ambion) and a ZKSCAN3 construct (RC202971; OriGene) were transiently transfected into UMUC3/647V and 5637 cells, respectively.
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8

Efficient Knockdown of Human ERβ using shRNA Lentivirus

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The shRNA lentivirus plasmids for human ERβ (sc-35325-SH) or non-target control (sc-108060) were purchased from Santa Cruz Biotechnology. The related lentiviruses for ERβ and empty control (CTL) were expressed through Lenti-X™ Lentiviral Expression Systems (from Clontech) per manufacturers’ instructions. The purified and condensed lentiviruses were used for in vitro gene knockdown. The knockdown efficiency was confirmed by more than 65% of mRNA reduction compared to the control group in cells using real time PCR (see Table 1).
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9

Stable Knockdown of ITGα3 in AsPC-1 Cells

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Plasmids specific for sh-ITGα3 and control shRNA (sc-35684-SH and sc-108060) were purchased at Santa Cruz Biotechnology to stably suppress ITGα3 expression using a sh-activated gene silencing vector system. Briefly, one day after transfection with shRNA constructs, AsPC-1 cells were grown in Dulbecco’s complete medium containing 5 µM puromycin for 3 days to select the stable transfectants.
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10

Silencing SIRT3 in AML12 Cells

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The shRNA-targeting SIRT3 (mouse, sc-61556) and scrambled RNA (mouse, sc-108060), and shRNA transfection reagent (mouse, sc-108061) were purchased from Santa Cruz Biotechnology. AML12 cells were transfected with 2 μg shRNA for 6 h according to the manufacturer's protocol. Cells were switched to fresh medium and incubated for an additional 24 h. Then, cells were selected with 2 μg/ml puromycin for 6 days, and then 4 μg/ml puromycin for 6 days. Thereafter, cells were pooled together for further experiments.
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