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7 protocols using nitrotyrosine

1

Renal Protein Expression Analysis

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Renal tissues or cells were harvested and centrifuged at 12,000 g to remove cell debris. Protein concentration was measured using a BCA assay kit (Pierce). Eighty micrograms of protein was subjected to SDS-PAGE and transferred onto polyvinylidene difluoride membranes. After transfer, the membranes were blocked and blotted routinely with antibodies against VE-cadherin (BD Biosciences), α-SMA (Abcam), collagen1 (Abcam), PP2Ac (Cell Signaling Technology), occludin (Invitrogen), P-threonine/P-serine (Santa Cruz), nitrotyrosine (Cayman), acetylated-lysine (Cell Signaling Technology), phosphotyrosine (PY-20,Biolgend), PP2A,C subunit, demethylated (Millipore), vimentin (Boster) and CD31 (Proteintech). The immunolabeled proteins were detected by enhanced chemiluminescence (Pierce).The density of the bands was analyzed by Quantity One software (Bio-Rad).
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2

Oxidative Stress and Inflammation in Myocardial Tissue

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Systemic oxidative stress was assessed by IVC levels of 8-epi-isoprostane (EIA kit) [23 (link)]. Myocardial oxidative stress was assessed by in-situ production of superoxide anion with dihydroethidium (DHE) and by expression of the NADPH-oxidase subunits p47 and p67 (1 : 200; both Santa Cruz), and by nitrotyrosine (1 : 200; Cayman Chemical Company, Ann Arbor, Michigan, USA) [23 (link),24 (link)].
Inflammation was evaluated in myocardial sections by standard immunostaining for MCP-1 (1 : 7500; MyBioSource Inc., San Diego, California, USA) and double staining for pro-inflammatory CD68+/iNOS+ (M1) (Abnova Inc., Walnut, California, USA; catalog#: ab15323, 1 : 100) and reparative CD68+/Arinase-1 (M2) (sc-20150 cat#: HPA004114, 1 : 100) macrophages. In addition, myocardial expression of tumor necrosis factor (TNF)-α (Santa Cruz, 1 : 200), interleukin (IL)-6 (1 : 500; Abcam), and IL-10 (1 : 200; Santa Cruz) was quantified by western blot.
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3

Western Blot Analysis of Oxidative Stress Markers

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Western blot analyses were conducted as previously described [4 (link)] using anti-AT1R (Santa Cruz, 1 : 1000), -AngII (Novus, 1 : 1000), -Nox2 (BD transduction, 1 : 5000), -Nox4 (Santa Cruz, 1 : 5000), -nitrotyrosine (Cayman, 1 : 1000), -Ly6G (ebioscience, 1 : 1000), and -GAPDH (Santa Cruz, 1 : 5000) antibodies. Densities of the blots were quantified using the ImageJ program (NIH, Bethesda, MD).
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4

Protein Expression Analysis in Cardiac Cells

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H9c2 cells and mice hearts were freshly harvested and homogenized in RIPA lysis buffer (Beyotime, Beijing, China), sonicated for 20s, and normalized with the BCA Protein Assay Kit (Beyotime). The protein was separated by 10% SDS/PAGE and then electro-transferred onto nitrocellulose membrane (Millipore, MA, USA). After blocked with 5% non-fat milk for 2hrs, the nitrocellulose membrane was washed in Tris-Buffered Saline Tween-20 (TBS-T) for three 10mins and incubated with gentle agitation at 4°C overnight with the primary antibodies to PARP-1 (1:2000, sigma, CA, USA), ICAM-1 (1:500; Santa Cruz Biotechnology, CA, USA), iNOS (1:1000, cell signaling technology, MA, USA), cleaved caspase-3 (1:1000, cell signaling technology), cleaved caspase-9 (1:1000, cell signaling technology), IGF-1R (1:1000, cell signaling technology), p-IGF-1R (1:1000, cell signaling technology), Akt (1:1000, cell signaling technology), p-Akt (1:1000, cell signaling technology), nitrotyrosine (1:2000, cayman, MI, USA), β-actin (1:1000, Cell Signaling Technology) followed by washes with TBS-T and subsequent incubation with appropriate horseradish peroxidase-conjugated secondary antibody for 2hrs at room temperature. Labeled protein was visualized through enhanced chemiluminescence (Millipore).
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5

Western Blot Analysis of Renal Protein

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Standard Western blotting protocols were followed as described (35 (link),36 (link)), using specific antibodies against TGF-β1 (1:200, Santa-Cruz, Dallas, TX), MCP-1, HIF-1α (both 1:1000, Abcam, Cambridge, England), TNFα (1:100, Santa-Cruz), GP91-phox, and p67-phox (both 1:200, Santa-Cruz), nitrotyrosine (1:200, Cayman), TIMP-1, VEGF (both 1:200, Santa-Cruz) and eNOS (1:1000, BD BioSciences, San Jose, CA). Protein expression was determined in one Sham, CAS, or non-stenotic HT and CAS+HT kidney in each animal, and the intensities of the protein bands quantified and normalized for a GAPDH (1:5000, Abcam) loading control.
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6

Immunoblot Analysis of Oxidative Stress

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The primary antibodies used in this study included rabbit anti-4-HNE (HNE11-S, Alpha diagnostics, San Antonio, TX, USA), heme-oxygenase 1 (Enzo, Farmingdale, NY, USA), nitrotyrosine (10189540, Cayman Chemical, Ann Arbor, MI, USA), pGSK3β Ser9 (9322, Cell Signaling Technology, Danvers, MA, USA), GSK3β (32391, Abcam, Cambridge, MA, USA), pERK1/2 (9106, Cell Signaling Technology, Danvers, MA, USA), total ERK1/2 (9102, Cell Signaling Technology), pJNK (9251, Cell Signaling Technology), total JNK (9252, Cell Signaling Technology), p38 (Cell Signaling Technology), pp38 (Cell Signaling Technology), and actin (clone C4, EMD Millipore, Burlington, MA, USA). Antibodies specific for phosphorylated tau at sites Ser 262 (ab4856, Abcam), Ser202/Thr205 (AT8, Invitrogen, Waltham, MA, USA), and Ser396/Ser404 (PHF1, gift of Sharon Greenberg and Peter Davies), as well as the conformational tau-specific antibody Alz50 (gift of Peter Davies, Albert Einstein College of Medicine, Bronx, NY, USA) and total tau (tau 5, Invitrogen), were used. Secondary antibodies used in this study included an anti-mouse/rabbit HRP-linked secondary antibody (7076 and 7074, Cell Signaling Technology, Danvers, MA, USA) and a goat anti-mouse or goat anti-rabbit (AP124 or AP132, Millipore, Temecula, CA, USA) peroxidase-conjugated antibody.
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7

Western Blot Analysis of Renal Protein

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Standard Western blotting protocols were followed as described (35 (link),36 (link)), using specific antibodies against TGF-β1 (1:200, Santa-Cruz, Dallas, TX), MCP-1, HIF-1α (both 1:1000, Abcam, Cambridge, England), TNFα (1:100, Santa-Cruz), GP91-phox, and p67-phox (both 1:200, Santa-Cruz), nitrotyrosine (1:200, Cayman), TIMP-1, VEGF (both 1:200, Santa-Cruz) and eNOS (1:1000, BD BioSciences, San Jose, CA). Protein expression was determined in one Sham, CAS, or non-stenotic HT and CAS+HT kidney in each animal, and the intensities of the protein bands quantified and normalized for a GAPDH (1:5000, Abcam) loading control.
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