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8 protocols using vectashield medium containing dapi

1

Immunohistochemistry-Based Embryo Sectioning

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To obtain embryo sections following immunohistochemistry, fixed embryos were washed in 5% sucrose (in PBS) for 3 hours at RT, and in 15% sucrose solution overnight at 4°C. Next, they were incubated in 7.5% porcine gelatin (dissolved in 15% sucrose solution) for 3 hours at 37°C, embedded in silicone molds, snap-frozen in liquid nitrogen and stored at −80oC. 8μM sections were obtained using the CryoStar NX50 (Thermo Fisher). For imaging, the slides were immersed in PBST at 42°C for 15 mins for gelatin removal, washed in PBS and mounted with Vectashield medium containing DAPI (Vector Labs).
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2

Immunofluorescence Analysis of Muscle Tissue

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Muscles were freshly frozen and cut in cryostat sections. Slides were fixed in 4% (wt/vol) paraformaldehyde (PFA), permeabilized with 0.5% Triton X-100 (Sigma–Aldrich). Primary antibodies used are as follows: laminin (1:200; Sigma), F4/80 (1:100; Serotec), and MHC (1:200, thermofisher). Appropriate fluorophore-conjugated secondary antibodies (Alexa Fluor 488) were used. Vectashield medium containing DAPI (Vector Laboratories) was used for mounting. Sections incubated without primary antibodies served as controls. Labeling was visualized by epifluorescent illumination using an Axiovision microscope (Carl Zeiss). The number of myofibers with central nuclei, the number of total myofibers and CSA (cross sectional area) of fibers were morphometrically analyzed with ImageJ software.
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3

Immunofluorescence Microscopy of LC3B and FOXO3a

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Immunofluorescence (IF) was performed as in ref. 27 (link) using the following antibodies: LC3B (2775S, Cell Signaling Technology, MA, USA) and FOXO3a (ab12162, Abcam, UK). Alexa-Fluor 594-conjugated goat anti-rabbit (Life technologies, Italy) was used as secondary antibody, and specimens were mounted with Vectashield medium containing DAPI (Vector Laboratories, USA). Images were acquired with confocal microscopy Zeiss LSM 700 E90, using 63x oil objective and processed with ZEN 2012 software.
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4

Immunohistochemical Analysis of Testicular Proteins

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Immunohistochemical analysis was performed as previously described in [12 (link)]. Briefly, the testes were removed and fixed in 4% paraformaldehyde. The tissues were frozen and cut into 25 µm sections, which were mounted on slide glasses. Suspended spermatozoa were treated with 4% paraformaldehyde and washed in 10 mM glycine in PBS, and then, they were mounted on glass slides and air-dried. The tissues and cells were treated with the appropriate blocking buffer and incubated with primary antibodies (chorein, PGK2, LDHC, and IDH3A) and the appropriate secondary antibodies. The immunoreactions were visualized using the avidin-biotinylated enzyme complex method (VECTASTAIN ABC kit, Vector Laboratories, Burlingame, CA, USA) or the immunofluorescence technique using secondary antibodies (Alexa Fluor 555 Donkey anti-goat IgG (H + L) and/or Alexa Fluor 480 donkey anti-rabbit IgG (H + L), Invitrogen, Eugene, OR, USA). For immunofluorescence, the coverslips were washed and mounted with Vectashield medium containing DAPI (Vector Laboratories) and then viewed with a BZ-X 710 fluorescence microscope system (Keyence, Osaka, Japan).
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5

IQOS CSE-Induced NRF2 Translocation

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To detect NRF2 translocation induced by IQOS CSE, ATI-like cells cultured on a 12 well hanging insert (control cells and cells exposed to 20% IQOS CSE for 0.5, 1, 2 and 4 h) were fixed in 4% paraformaldehyde. After blocking with 3% normal goat serum (Rockland Immunochemicals, Inc., Limerick, PA, USA) in PBS, the cells were incubated with rabbit anti-NRF2 (N2C2) antibody (GeneTex, Inc., Irvine, CA, USA) overnight. Next, cells were incubated with the secondary antibody, Alexa Fluor 594 goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA) for 1 h, and subsequently, the cells were mounted with Vectashield medium containing DAPI (Vector laboratories, Burlingame, CA, USA).
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6

Clotrimazole Modulates Stress Granule Dynamics

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For imaging experiments, 1 × 103 cells were plated on glass cover slides (VWR, West Chester, PA) 24 h before drug treatment. Cells with 80% confluency were used for the following experiments. Pre-incubation of cells with 50 μM PD98059 for 1 h was followed by treatment with 20 μM of clotrimazole in serum-free medium. Immunostaining was done using the following primary antibodies after clotrimazole treatment: anti-EIF3α pAb (SGs marker), or anti-hnRNP K mAb at dilutions of 1:100, 1: 50, and 1:100, respectively. Cells were fixed with 4% PFA formaldehyde for 15 min followed by ice-cold methanol for 5 min. Cells were then washed once with ice-cold PBS, and non-specific binding sites were blocked in PBS/0.1% BSA for 1 h at room temperature prior to incubation with primary antibodies. The immune reaction for each primary antibody was detected by Cy5 (blue; for EIF3α), or FITC-(green; for hnRNPK) conjugated secondary antibodies (1:250) for 30 min at room temperature. Slides were mounted in Vectashield medium-containing DAPI (Vector Laboratories, Inc., Burlingame, CA) and analyzed using AxioVision under a microscope (Carl Zeiss Inc.).
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7

Clotrimazole Modulates Stress Granule Dynamics

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For imaging experiments, 1 × 103 cells were plated on glass cover slides (VWR, West Chester, PA) 24 h before drug treatment. Cells with 80% confluency were used for the following experiments. Pre-incubation of cells with 50 μM PD98059 for 1 h was followed by treatment with 20 μM of clotrimazole in serum-free medium. Immunostaining was done using the following primary antibodies after clotrimazole treatment: anti-EIF3α pAb (SGs marker), or anti-hnRNP K mAb at dilutions of 1:100, 1: 50, and 1:100, respectively. Cells were fixed with 4% PFA formaldehyde for 15 min followed by ice-cold methanol for 5 min. Cells were then washed once with ice-cold PBS, and non-specific binding sites were blocked in PBS/0.1% BSA for 1 h at room temperature prior to incubation with primary antibodies. The immune reaction for each primary antibody was detected by Cy5 (blue; for EIF3α), or FITC-(green; for hnRNPK) conjugated secondary antibodies (1:250) for 30 min at room temperature. Slides were mounted in Vectashield medium-containing DAPI (Vector Laboratories, Inc., Burlingame, CA) and analyzed using AxioVision under a microscope (Carl Zeiss Inc.).
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8

Immunofluorescence Characterization of Cultured Stromal Cells

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Cultured stromal cells at fourth to fifth passages were fixed with 4% paraformaldehyde in PBS followed by cellular permeabilization with and 0.1% Triton-X100 and incubation at 4°C into a blocking solution, consisting of PBS with 3% bovine serum albumin. Subsequently, cells were incubated overnight with primary antibodies for vimentin (1:200, M0725; Dako) and cytokeratin 18 (1:300, CK18; Dako) in separate slides. Mouse IgG antibodies instead of primary antibodies were used as negative controls. Fluorescein isothiocyanate (FITC)-conjugated secondary antibody (1:400, M4413; Cell Signaling) was used for fluorescence staining. Nuclear staining was performed by mounting slides with coverslips using Vectashield medium containing DAPI (Vector Laboratories, Burlingame, CA, USA). Cell images were acquired with an IX-51 inverted microscope (Olympus).
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