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17 protocols using ab179450

1

Foxo1-GSDMD Promoter Binding Assay

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Subsequent to 4% methanol (final concentration: 1%) treatment, H9C2 cells underwent ultrasonication, after which anti‐Foxo1 (ab179450, 1:30; Abcam) and Foxo1‐GSDMD promoter were supplemented for mutual binding. After complete binding through overnight incubation at 4°C, Protein A Agarose/SaLmon Sperm DNA was added to bind to and precipitate Foxo1 antibody‐Foxo1‐GSDMD promoter complexes. The complexes were washed to remove nonspecific bindings and eluted to obtain the enriched Foxo1‐GSDMD promoter complexes. Subsequent to 5‐min centrifugation at 12,000g, the supernatant was discarded, and nonspecific complexes were washed. Samples were subjected to overnight de‐crosslinking at 65°C. Phenol/chloroform was used to extract, purify, and recycle DNA fragments. The enriched fragments of GSDMD promoters were purified, followed by polymerase chain reaction, with IgG (ab109489, 1:100; Abcam) as the negative control. The experiment was repeated thrice.
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2

Protein Extraction and Western Blot Analysis

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We collected TG tissues from mice and lysed them with RIPA reagent in order to extract the proteins. Sample proteins were run on SDS-PAGE and transferred using PVDF membranes. Then, 5% skimmed milk was applied to the block. Primary antibodies include anti-FOXO1 (ab179450; Abcam, Waltham, MA, USA), anti-P62 (P0067; Sigma), anti-LC3B (ab192890; Abcam), anti-BCL2 (ab182858; Abcam), and β-actin (Sigma). Membranes were then incubated with corresponding antibodies overnight. The next day, we incubated membranes with the secondary antibodies horseradish peroxidase (HRP; ab6721; Abcam) for 1 hour after rinsing the membranes with TBS + Tween (TBST) thrice. Finally, enhanced chemiluminescence (ECL) solution (Millipore, St. Louis, MO, USA) was utilized to visualize the protein bands.
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3

Western Blot Analysis of Kidney Proteins

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Total protein was extracted from mice kidney tissue and HK‐2 cells with a RIPA lysis solution, and protein content was measured using BCA assay. An equal amount of protein was separated using SDSPAGE and then transferred to a nitrocellulose membrane. Membrane was blocked using 5% skim milk for 2 hr at room temperature and incubated with primary antibodies: FoxO1 (ab179450, 1:1000, abcam), SERPINB1 (ab181084, 1:1000, abcam) and GAPDH (sc‐47724, 1:5000, Santa Cruz Biotechnology) at 4°C over‐night. Membrane was incubated with peroxidase‐labeled secondary antibodies at 37°C for 1 hr. The protein bands were observed using ECL assay and quantified with the ChemiDoc XRS + imaging system (Bio‐Rad, Hercules, CA, USA).
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4

Western Blot Analysis of Insulin Signaling Proteins

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Radioimmunoprecipitation assay buffer (RIPA) (Sangon, China) was used to extract
proteins from cultured cells and the concentration was determined using a
bicinchoninic acid kit (Sangon Biotech Co., Ltd.). Total protein (10 µg) was
resolved by 12% sodium dodecyl sulphate-polyacrylamide gel electrophoresis
(SDS-PAGE). The proteins were transferred to polyvinylidene difluoride (PVDF)
membranes. Non-fat milk (10%) in PBS buffer (90%) was used to block the
membranes at room temperature for 1 h. Then, the membranes were incubated with
primary antibody at 4°C overnight and secondary antibody at room temperature for
2 h. The immunoreactive bands were developed using an enhanced chemiluminescence
kit (Santa Cruz, USA, sc-2048) and photographed on a gel imager system (Bio-Rad,
USA). The densitometry analysis was performed with ImageJ software (IBM, USA).
The antibodies used in this study were as follows (all from Abcam, USA): GAPDH
(1:2500; ab9485; USA); C/EBP-α (1:1000; ab40761); PPAR-γ (1:1000; ab178860);
C/EBP-α (1:1000; ab40761;); IRS (1:10000; ab40777); p-IRS (1:10000; ab109543);
AKT (1:500; ab8805); p-AKT (1:500; ab38449); FoxO1 (1:1000; ab179450); p-FoxO1
(1:1000; ab259337); PI3K (1:1000; ab191606); p-PI3K (1:1000; ab278545); β-actin
(1:1000; ab8226). In addition, HRP-linked secondary antibody was used (1:3000;
Cell Signaling #7074, USA).
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5

Western Blot Analysis of Lipid Metabolism

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Protein was extracted with Western Cell Lysis Buffer with 1% phenylmethyl sulfonyl fluoride (Sangon Biotech, Shanghai, China). Next, a modified BCA Protein Assay Kit (Sangon Biotech, Shanghai, China) was used to determine the protein concentration according to the absorbance at 562 nm. The 30 μg total protein was loaded onto an SDS polyacrylamide gel (Solarbio, Beijing, China), including 5% stacking gel and 8% resolving gel. After electrophoresis at 75 V for 30 min and 100 V for 60 min, protein was transferred to a 0.45 μm PVDF membrane (Millipore, Billerica, MA, United States) at 100 V for 2–4 h, blocked in 5% non-fat milk for 60 min, and incubated with primary antibodies for 12 h at 4°C (Abcam, UK) (FOXO1 69KD, 1:1,000, ab179450; sirtuin 1 (SIRT1) 110KD, 1:1,000, ab189494; adipose triglyceride lipase (ATGL) 55KD, 1:1,000, ab109251; sterol regulatory element-binding protein-1c (SREBP-1c) 127KD, 5 μg/ml, ab3259; fatty acid synthase (FASN) 273KD, 1:1,000, ab128856; GAPDH 37 KD, 1:10,000, ab181602); CYP2E1 (57KD, 1:2,000, 19937-1-AP) (Proteintech, UK), and the HRP conjugated secondary antibody (Beyotime, Shanghai, China) for 60 min. Subsequently, a BeyoECL Star kit (Beyotime, Shanghai, China) was used to conduct the western blotting detection, and the relative quantitative analyses were performed in Image J software.
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6

Western Blot Analysis of Ovarian Tissue Proteins

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Ovarian tissues were washed thrice with pre-cooled PBS buffer and added with RIPA lysis buffer (Beyotime). A BCA protein assay kit (Beyotime) was used to evaluate protein concentration, after which the corresponding volume of protein was mixed with loading buffer (Beyotime) and heated in a boiling-water bath for 3 min. Electrophoresis was performed at 80 V for 30 min, and turned to 120 V for additional 1–2 h after bromophenol blue entered separation gels. The protein was blotted onto membranes in an ice-bath at a current of 300 mA for 60 min, after which the membranes were rinsed with washing buffer for 1–2 min and blocked in blocking buffer at room temperature for 60 min or at 4°C overnight. Incubation with anti-KLOTHO (PA5-99961, 1:1,000; Thermo Fisher Scientific), anti-FOXO1 (ab179450, 1:1,000; Abcam), anti-Bcl-2 (ab196495, 1:1,500; Abcam), or anti-Bax (ab32503, 1:1,000; Abcam) was performed on a shaker at room temperature for 1 h. The membrane was washed thrice with washing buffer for 10 min each, incubated with goat anti-rabbit immunoglobulin G (IgG) for 1 h at room temperature, and washed thrice for 10 min each. A chemiluminescence imaging system (Bio-Rad) was used to visualize the immunoblots after developer was added dropwise onto the membranes. All experiments were repeated in triplicate.
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7

Western Blot Analysis of FOXO1 in Mouse Tumor

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Mouse tumor tissue homogenate was lysed with the enhanced radio-immunoprecipitation assay (RIPA) lysate (Boster) containing a protease inhibitor for 20 min and centrifuged at 4°C at 3000 g for 20 min and isolation of the supernatant. The protein concentration in the supernatant was detected using the BCA protein quantitative kit. The protein content was isolated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The isolated protein content was transferred onto polyvinylidene fluoride (PVDF) membranes. A membrane blockade was induced using 5% bovine serum albumin (BSA) at room temperature for 2 h to block any nonspecific binding, prior to incubation with the primary antibody FOXO1 (ab179450, Abcam) at 4°C overnight. After a rinse with the tris buffered saline-Tween20 (TBST), the sample was supplemented with horseradish peroxidase (HRP) labeled secondary antibody and incubated for 1 h at room temperature. The enhanced chemiluminescence (ECL) reagent (EMD Millipore, Bedford, MA, USA) was added for development. Image Pro Plus 6.0 (Media Cybernetics Inc., Silver Springs, MD, USA) was used to quantify the gray scale of bands in each group in WB images, with β-actin serving as an internal parameter. Each experiment was conducted three times independently.
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8

Exosomal Protein Expression Analysis

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The cells or exosomes were lysed, and the isolated proteins were denatured in loading buffer after concentration detection. The separation of proteins was carried out by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) electrophoresis and then transferred to the polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA, USA). The membranes were blocked and incubated with antibodies containing anti-CD63 (ab134045, 1:2000, Abcam, Cambridge, MA, USA), anti-CD81 (ab109201, 1:2000, Abcam), anti-TSG101 (ab125011, 1:3000, Abcam), anti-Calnexin (ab92573, 1:20000, Abcam), anti-FOXO1 (ab179450, 1:2000, Abcam) and anti-GAPDH (ab9485, 1:2500, Abcam) antibodies at 4°C overnight. After washing with TBST, the membranes were incubated with secondary antibody goat anti-rabbit IgG (ab6721, 1:5000, Abcam) for 2 h. Subsequently, the bands were visualized by the enhanced chemiluminescence (ECL) reagent (Millipore).
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9

Western Blot Analysis of Inflammatory Markers

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At each post-ICH time point, the brain samples were collected and prepared for western blot analysis as previously described [8 ]. Briefly, the ipsilateral/right brain hemisphere sample was prepared using RIPA lysis buffer (sc-24948, Santa Cruz Biotechnology). Then, 4 μL of protein sample was loaded onto an SDS-PAGE gel and transferred to a nitrocellulose membrane. The membrane was blocked with 5% non-fat milk and incubated with the following primary antibodies: rabbit anti-CCR4 (1:1000, GTX53474, Gene Tex, USA); rabbit anti-CCL17 (1:1000, ab182793, Abcam); rabbit anti-PI3K (1:1000, Cell Signaling, Danvers, MA, USA); rabbit anti-AKT (1:1000, Cell Signaling); rabbit anti-phosphorylated AKT (p-AKT, 1:1000, Cell Signaling); rabbit anti-Foxo1 (1:1000, ab179450, Abcam); goat anti-Iba-1 (1:1000, ab5076, Abcam); mouse anti-MPO (1:1000, sc-390109, Santa Cruz Biotechnology); rabbit anti-IL-1β (1:1000, ab9722, Abcam); rabbit anti-TNF-α (1:1000, ab6671, Abcam); anti-Bcl-2 (1:2000, Abcam); anti-Bax (1:4000, Abcam); and mouse anti-β-actin (1:3000, sc-47778, Santa Cruz Biotechnology) overnight at 4 °C. Membranes were incubated with corresponding secondary antibody (1:3000, Santa Cruz; 1:5000, Abcam) for 2 h at room temperature. The relative density of the protein bands was quantified by the ImageJ software (ImageJ 1.4, NIH, Bethesda, MD, USA).
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10

Western Blot Analysis of Oxidative Stress Markers

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Protein samples from RAW264.7 macrophages or lung tissues were washed with PBS, followed by the lysis on ice in lysis buffer containing phosphatase inhibitors and protease inhibitors. Next, the samples were centrifuged (12,000 × g) at 4°C for 15 min. Equal amounts of protein were separated on SDS-PAGE gel, which were then transferred onto polyvinylidene difluoride membranes. After that, 5% nonfat milk was used to block the membranes for 90 min at room temperature, followed by the incubation with primary antibodies at 4°C overnight. Then, the membranes were incubated with peroxidase-conjugated secondary antibodies at room temperature for 60 min. At last, the grey value of these protein bands was scanned and quantified using Image Lab software (BioRad, USA). The primary antibodies as well as their dilution ratio are displayed as follows: SOD1 (#ab183881, Abcam, 1 : 1000), SOD2 (#ab68155, Abcam, 1 : 1000), GPX4 (#ab252833, Abcam, 1 : 500), GAPDH (#ab8245, Abcam, 1 : 1000), phosphorylated-AKT (p-AKT) (#ab38449, Abcam, 1 : 500), AKT (#ab18785, Abcam, 1 : 500), p-Foxo1 (#ab259337, Abcam, 1 : 500), and Foxo1(#ab179450, Abcam, 1 : 500). The relative protein levels of genes were normalized with the level of GAPDH in the same group.
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