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4 protocols using mm300

1

PGE2 Measurement in Rat Duodenum

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The PGE2 concentration was measured in the rat duodenum as described previously.(11 (link),12 (link)) In brief, the duodenum at the site of the closed space was excised, quickly frozen with liquid nitrogen. After measuring the weight of the duodenal tissue, homogenization (300 Hz/s, 3 min) was conducted with a mixer mill (MM300; QIAGEN, Hiden, Land Nordrhein-Westfalen, Germany). The protein concentration in the supernatant was measured with the BCATM protein assay kit (Thermo Fisher Scientific Inc, MA). The level of PGE2 was measured by enzyme-linked immuno­sorbent assay. To measure the amount of prostaglandin E2 (PGE2), EIA Kit-Monoclonal (Cayman Chemical Company, Ann Arbor, MI) was used according to the methods described in the manual. The concentration was determined following absorbance measurement with a microplate reader (SPECTRA MAX 250; Molecular Devices Japan Co., Tokyo, Japan). 0.2 ml saline was added instead of hydrochloric acid (HCl) as a comparison (saline group). The normal group was defined as the one in which the duodenum was removed under laparotomy without administering anything to the duodenum.
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2

Chlorella N-deficiency Protein Extraction

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Chlorella cultivated in N-deficient media were harvested by centrifugation at 8,000 rpm for 20 min, and then, the spent medium and Chlorella were sampled. For extraction of total protein from Chlorella cells, 50 mg of cells frozen in liquid N were homogenized in a mixer mill MM300 (Qiagen, Germany) and then resuspended in 1 M PBS buffer (pH 7.4) including 1 × cOmplete™ (Roche, Germany) at 4 °C. The solution was centrifuged at 14,000 rpm for 10 min, and then, the supernatant was transferred into a new tube. To determine the concentration of total proteins in the medium, the spent medium was filtered through a 0.2 μm membrane and was concentrated up to 250 times via 5 kDa size cut-off Viva Flow 200 and Vivaspin 20 in turn (Sartorius, USA). After the cell lysates and total proteins from the medium were separated in 12% NuPAGE gel (Invitrogen, USA), they were transferred onto nitrocellulose membranes using the TurboTransfer system (Bio-Rad, USA). After the membrane was incubated with the polyclonal antibody of hG-CSF (Abcam, USA) for 1 h (1:2000 dilution), it was exposed to anti-rabbit IgG-HRP, which was diluted to 1:5,000 (Abcam, USA). Recombinant hG-CSF synthesized in CHO cells (Abcam, USA) was used as the positive control.
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3

Nucleic Acid Extraction from Chlorella Cells

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To extract nucleic acids, Chlorella cells were harvested by centrifugation, frozen quickly using liquid N, and then ground using a mixer mill MM 300 (Qiagen, Germany) as described by Kumar et al.15 . Genomic DNA was extracted from the powder using the cetyl trimethylammonium bromide method70 (link). To investigate the presence of transgenes in the hygromycin-resistant cell lines, PCR was performed on genomic DNA using hG-CSF primers, which were designed to propagate 351 bp-long transcripts, from 31 to 381 nt of the codon-optimized hG-CSF gene. Total RNA was isolated using Trizol (Invitrogen, USA). After DNase I treatment, the RNA was reverse transcribed at 50 °C for 1 h using TOPscript cDNA Synthesis Kits (Enzynomics, Korea) and subjected to RT-PCR and qPCR using primers for detecting hG-CSF transcripts. For RT-PCR, the normalization for quantification was performed by PCR using Chlorella ubiquitin (CvUbi) and/or Actin1 (CvAct1) gene primers. The number of cycles for RT-PCR was 25 cycles for CvUBI and 32 cycles for hG-CSF. For qPCR, the comparative threshold cycle method (ΔΔCt) was used (LightCycler 96; Roche, USA). The CvUbi gene was used as an internal reference. The primers used in this study are summarized in Supplementary Table 2.
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4

Quantification of Bladder PGE2 Levels

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After measuring the weight of mucosal tissue of the bladder, homogenization (300Hz/s, 3 min) was conducted with a mixer mill (MM300; Qiagen). The protein concentration in the supernatant was measured with the BCATM protein assay kit (Thermo Fisher Scientific). The urine and retrieved intravesical irrigation samples were centrifuged at 3000g for 10min at 4°C.
The supernatant was separated into aliquots in 96 well plates and preserved in a freezer at -80°C .
The level of PGE2 was measured by enzyme-linked immunosorbent assay (ELISA). To measure the amount of PGE2, a PGE2 EIA Kit-Monoclonal (Cayman Chemical) was used according to the methods described in the manual. The concentration was determined following absorbance measurement with a microreader (SpectraMax 250; Molecular Devices Japan). The total tissue PGE2 (pg/ml) was normalized by the weight of tissue and the ratio of PGE2/ the weight of tissue used as a normalized tissue PGE2 level. The total urinary PGE2 level (pg/ml) was normalized by the urinary creatinine and the ratio of PGE2/creatinine used as a normalized urinary PGE2 level.
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