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4 protocols using lb medium

1

Bacterial Transformation Protocol

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The IPTG/X-gal stock solution: 1.25 g IPTG (Sigma–Aldrich, St. Louis, MO) and 1 g X-gal in 25 mL DMSO (Sigma–Aldrich, St. Louis, MO). Tetracycline (Sigma–Aldrich, St. Louis, MO) stock suspension: 20 mg/mL Tetracycline in 1 mL of 96% ethanol. LB/IPTG/X-gal plates: 1 L LB medium (AppliChem GmbH, Darmstadt, Germany), 15 g/L agar, and 1 mL IPTG/X-gal stock solution. LB/Tet plates: 1 L LB medium, 15 g/L agar and 1 mL Tetracycline stock (15 mg/mL). PEG/NaCl: 20% (w/v) PEG 8000 (Sigma–Aldrich, St. Louis, MO), 2.5 M NaCl. Iodide buffer: 10 mM Tris-HCl (pH = 8), 1 mM EDTA and 4 M NaI (Sigma–Aldrich, St. Louis, MO).
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2

Molecular Components Procurement Protocol

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Oligonucleotides were obtained from biomers.net, dNTPs from Jena Biosciences and [γ-32P]-ATP from Hartmann Analytic. LB medium was purchased from AppliChem. ONPG, streptomycin sulphate salt, doxycycline hydrochloride, tetracycline hydrochloride and theophylline were obtained from Sigma Aldrich. Ampicillin and arabinose were purchased from Carl Roth.
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3

Antimicrobial Activity of Gentamicin Eluate

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The antimicrobial activity of the eluted released gentamicin was determined using an agar diffusion test regime with a Gram-positive bacterium, Staphylococcus aureus, clinically isolated, as described before [13 (link)]. Bacteria were grown in a LB medium (2 g yeast extract, 4 g tryptone (both Applichem GmbH Darmstadt, Germany, 2 g NaCl (Sigma-Aldrich, Darmstadt, Germany) and 400 mL H2O double dest)) and plated on LB agar plates (LB medium containing 1.5% (w/v) agar (Applichem GmbH, Darmstadt, Germany)) to get a bacterial lawn. Fifty µL of the eluate were pipetted on filter discs (diameter = 12 mm), which were placed in the middle of the agar gel. After 24 h of cultivation at 37 °C, the extent of the inhibition zones was measured.
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4

Isolation and Characterization of Potato-Associated Pseudomonas Strains

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The four Pseudomonas strains used for this study were isolated in 2015 from field-grown potatoes as described in [9 (link),25 (link)], two from the roots (Pseudomonas donghuensis R32, P. chlororaphis R47) and two from the shoots (Pseudomonas sp. S04, Pseudomonas sp. S35). We selected these strains because they differed in their protective activity against P. infestans and in their ability to emit VOCs on laboratory media. The strains were kept in 25% (v/v) glycerol for long-term storage and passaged weekly on 1.5% agar (w/v; Erne, Switzerland) LB medium (20 g/L; Applichem, Schaffhausen, Switzerland) or ABG medium [26 (link)] for routine use.
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