The largest database of trusted experimental protocols

362 protocols using c myc

1

Immunohistochemical Analysis of Mouse Lung

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse lungs were fixed in zinc-buffered formalin, processed, embedded in paraffin, cut into 5-μm sections, and mounted on glass slides. Citrate-mediated antigen retrieval was performed, and then the following antibodies were used for detection: anti-β-catenin (Cell Signaling Technology), anti-AQP5 (Calbiochem), anti-Ki67, (Abcam), anti-BrdU, anti-CC10, anti-Cyclin D1, anti-SPC, anti-NKX2.1 (also known as TTF-1) (Santa Cruz Biotechnology), and c-MYC (Epitomics).
β-Galactosidase activity driven by the BAT-GAL transgene was assessed in fresh-frozen sections incubated with 5-bromo-4-chloro-3-indolyl-β-d-galactoside (X-Gal) for 16 h as described previously (Maretto et al. 2003 (link)).
Fifty-microgram aliquots of cell proteins were probed with antisera against c-MYC (Epitomics), Cyclin D1, p-ERK1/2 (pT202/PY204), total ERK1/2 (Cell Signaling Technology), and anti-β-actin (Sigma). Immunoblots were visualized using the Odyssey Classic or Odyssey Fc, with data analyzed using either the Odyssey application software version 3.0.30 or Image Studio version 2.0 software (LI-COR Biosciences).
+ Open protocol
+ Expand
2

Western Blot Analysis of Apoptosis and Cell Cycle Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
For western blot analysis, cells were harvested and extracted in lysis buffer (50 mM Tris (pH 7.4), 150 mM NaCl, 0.1% SDS, 1% NP-40, and 1 mM phenylmethylsulfonyl fluoride (PMSF)). The analysis was performed as described previously [17 ]. The primary antibodies used to detect apoptotic markers were Bcl-2 (Santa Cruz, California, CA, USA), Bax (Abcam, Cambridge, MA, USA), cytochrome C (Santa Cruz, California, CA, USA), PARP, cleaved PARP, caspase 3, cleaved caspase 3, caspase 7, cleaved caspase 7, caspase 9, and cleaved caspase 9 (all from CST, Danvers, MA, USA). The primary antibodies c-Myc, cyclin D1, and cyclin E1 (all from Abcam, Cambridge, MA, USA) were used to detect cell cycle proteins. β-Catenin, GSK3β, p-GSK3β, c-Myc, cyclin D1, and cyclin E1 (all from Abcam, Cambridge, MA, USA) were used to analyze the Wnt/β-catenin pathway. β-Actin (CST, Danvers, MA, USA) was used as an internal control.
+ Open protocol
+ Expand
3

Comprehensive Antibody Validation for ChIP-seq

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used in this study were CTCF (Active Motif, catalog no. 61932), c-MYC (Abcam, ab56-9E11), c-MYC (Abcam, ab32072-Y69), WDR5 (Proteintech, catalog no. 15544-1-AP), FOXA1 (Bethyl Laboratories, A305-249A), H3K27ac (Active Motif, catalog no. 39685), AR (Abcam, ab108341), MAX (Proteintech, catalog no. 10426-1-AP), full-length PARP (Cell Signaling Technologies, 46D11, catalog no. 9532T), cleaved PARP (Cell Signaling Technologies, D64E10, catalog no. 5625T), MNT (Bethyl Laboratories, A303-627A), MXD1 (Proteintech, catalog no. 17888-1-AP), MGA (Bethyl Laboratories, A302-865A), FOXM1 (Diagenode, catalog no. C15410232), histone H3 (Abcam, ab10799), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH; Sigma-Aldrich, G9545). MYCi975 was synthesized as described (21 (link)).
+ Open protocol
+ Expand
4

Western Blot Analysis of Apoptosis Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The rat heart tissue and cultured H9c2 cell line were homogenized in RIPA buffer. Proteins from the homogenate (20 μg/well) were separated on a one-dimensional 4%–10% SDS polyacrylamide gel and transferred to a polyvinylidene membrane (Bio-Rad, Hercules, CA, USA) with a semidry electrotransfer apparatus for 1.5 h at 300 mA. The expression levels of Myd88, c-Myc, cleaved-Bid, p53, Bax, Bcl-2, cleaved-caspase-3, Irak-2, and IL-1R were determined (Myd88, c-Myc, p53, Bax, Bcl-2, and IL-1R; 1:1,000; Abcam, Cambridge, MA, USA; Irak-2; 1:1,000; Cell Signaling Technology, Danvers, MA, USA; cleaved Bid and cleaved-caspase-3; 1:500; WanleiBio, Shenyang, Liaoning Province, China). The immunoblots were visualized by enhanced chemiluminescence (ECL detection kit from GE Healthcare, Chicago, IL, USA).
+ Open protocol
+ Expand
5

Comprehensive Molecular Profiling Techniques

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting: TIMELESS (Abcam, ab109512, 1/50000), β-actin (Abcam, ab49900, HRP-linked,1/50000), c-Myc (Abcam, ab32072, 1/1000) and PD-L1 (Cell Signaling Technology, #13684, 1/1000), Rabbit secondary antibody (Cell Signaling Technology, #7074, 1/2000).
Immunohistochemistry: TIMELESS (Abcam, ab72458, 1/200), CD8a (Servicebio, GB13429, 1/200), PD-L1 (Servicebio, GB11339A, 1/500), Ki-67 (Servicebio, GB111141, 1/500), Mouse secondary antibody (Servicebio, GB23301, 1/200), Rabbit secondary antibody (Servicebio, GB23303, 1/200).
Immunofluorescence: TIMELESS (Abcam, ab109512, 1/100), c-Myc (Abcam, ab32072, 1/100), CD8a (Servicebio, GB13429, 1/5000), Granzyme B (Abcam, ab255598, 1/2000), active caspase 3 (Servicebio, GB11532, 1/500), Hoechst 33342 (Beyotime, C1027, 1/100), CY3-TSA (Apex Bio, K1051, 1/200), Donkey Anti-Rabbit IgG H&L Alexa Fluor® 647 (Abcam, ab150075, 1/200).
Flow cytometry: PD-L1 (Cell Signaling Technology, #13684, 1/200), CD8a-PerCP/Cyanine5.5 (Clone 53-6.7, Biolegend 1007341/100), CD45-AF700 (Biolegend 103128, 1/80), Fixable Viability Dye eFluor™ 450 (Invitrogen, 1/500).
+ Open protocol
+ Expand
6

Analyzing Cell Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Axin2 (#2151, Cell signaling technology), c-Myc (#1472–1, Epitomics), β-actin (#A1978, Sigma), pACC (#11818, Cell signaling technology), Total ACC (#3676, Cell signaling technology), pAMPK (#2535, Cell signaling technology), Total AMPK (#2532, Cell signaling technology), GAPDH (#GTX627408, GeneTex), Plk1 (#sc-17783, Santa Cruz), cyclinD1 (#2978, Cell signaling technology), cyclinB1 (#4135, Cell signaling technology), p-Akt (#9272, Cell signaling technology), Total-Akt (#1081–1, Epitomics), p-P70S6K (#9234, Cell signaling technology), Total-P70S6K (#2708, Cell signaling technology), p-4E-BP1 (#2855, Cell signaling technology), Total-4E-BP1 (#GTX109162, GeneTex), p-CDC2 (#9111, Cell signaling technology), Total-CDC2 (#GTX108120, GeneTex). Compounds: GSK461364 was purchased from Cayman Chemical (Ann Arbor, MI, USA). BI2536 was from Achemblock (Burlingame, CA). DAPI and PI were from ThermoFisher (Waltham, MA).
+ Open protocol
+ Expand
7

Characterizing TNBC Cell Line Resistance

Check if the same lab product or an alternative is used in the 5 most similar protocols
The human TNBC cell lines MDA-MB-231 and MDA-MB-468 were from ATCC and stored in our laboratory. The docetaxel or vinorelbine-resistant MDA-MB-231 cell lines (MDA-MB-231/DR or MDA-MB-231/VR) were treated and established with docetaxel or vinorelbine for about 6 months in our laboratory. All these cell lines were cultured in DMEM medium supplemented with 10% fetal bovine serum (HyClone, USA) in 5% CO2 at 37 °C. Docetaxel and vinorelbine were purchased from Aosaikang and Haosen in China, respectively. Aspirin was purchased from Sigma in USA. The following antibodies were used for IHC and western blotting: YAP (Abcam, UK), β-catenin (Santa Cruze, USA), β-TrCP, Bcl-l2, Bax (CST, USA), C-Myc, CyclinD1 (Epitomics, USA), Ki67 (MXB biotechnologies, China), GAPDH (Biostar, China).
+ Open protocol
+ Expand
8

MTT Assay and Signaling Pathway Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
3-(4,5-Dimethylthiazol-yl)-2,5-diphenyltetrazolium bromide (MTT), propidium iodide (PI) and other chemicals were purchased from Sigma (St. Louis, Missouri, USA). The specific anti-SHP1 short interfering RNA (siRNA) and nonspecific control siRNA sequences were purchased from GenePharma (Shanghai, China). Commercial antibodies to the following antigens were as follows: SHP-1, EGFR, p-GSK3β (Ser9), Cyclin D1, and c-Myc (Epitomics, Burlingame, USA); p-EGFR, β-actin, GAPDH, histone H3, and EGFR (Santa Cruz Biotechnology, California, USA); h-Ras, p-Erk1/2, Erk1/2, β-catenin, Snail, E-cadherin, and N-cadherin (Cell Signaling Technology, Massachusetts, USA); k-Ras, GSK3β (Proteintech Group, Chicago, USA); and SHP-1 (Abcam, Cambridge, UK).
+ Open protocol
+ Expand
9

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell pellets from transfection procedures were lysed in Mammalian Protein Extract Reagent (M-PER; Pierce/Thermo Scientific, Rockford, IL, USA). Following pre-cleaning by centrifugation, protein concentrations of cell lysates were determined by using Protein Assay Reagent (Bio-Rad, Hercules, CA, USA). Lysates equivalent to 25 μg of protein were separated on NuPAGE Bis-Tris (4-12%) gels (Invitrogen, Carlsbad, CA, USA) and transferred onto PVDF membranes. Membranes were blocked in Blocking Buffer (LI-COR, Lincoln, NE, USA) and incubated with specific antibodies against ERG splice variants (ERG MAb 9FY; Biocare Medical Inc., Concord, CA, USA), C-MYC (Epitomics, Burlingame, CA, USA) and GAPDH (Santa Cruz biotechnology, Santa Cruz, CA, USA). Membranes were washed in Tris-Buffered Saline + Tween 20 (TBST) before incubation with appropriate secondary antibodies (goat anti- Mouse IRDye 8000CW or goat anti-Rabbit IRDye 680CW, LI-COR). Signals of proteins detected were visualized and quantitatively measured using the Odyssey infra-red imaging scanner and software (LI-COR).
+ Open protocol
+ Expand
10

Evaluating Metabolic Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies: Axin2 (#2151, Cell signaling technology), c-Myc (#1472-1, Epitomics), p-ACC (#11818, Cell signaling technology), ACC (#3676, Cell signaling technology), p-AMPK (#2535, Cell signaling technology), AMPK (#2532, Cell signaling technology), p-P70S6K (#9234, Cell signaling technology), P70S6K (#2708, Cell signaling technology), p-S6 (#4858, Cell signaling Cell signaling technology), S6 (#2317, Cell signaling technology), GAPDH (#GTX627408, GeneTex). Compounds: BAY-876 (N4-[1-(4-cyanobenzyl)-5-methyl-3-(trifluoromethyl)-1H-pyrazol-4-yl]-7-fluoroquinoline-2,4-dicarboxamide) was purchased from Medkoo Bioscience (#530485).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!