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Buffered formalin

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Buffered formalin is a fixative solution used in histology and pathology laboratories for the preservation and preparation of tissue samples. It is a mixture of formaldehyde and a buffering agent, typically sodium phosphate, which helps maintain the pH of the solution. Buffered formalin is used to fix and preserve the structural integrity of cells and tissues, preparing them for further processing and analysis.

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21 protocols using buffered formalin

1

Histological Analysis of NOG-IL-4-Tg Mouse Tissues

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NOG-IL-4-Tg mouse spleen tissues were fixed with 20% buffered formalin (Wako Pure Chemical Industries, Ltd) and embedded in paraffin. A paraffin block was micro-sectioned and de-paraffinized, and post-fix tissue sections on glass slides were stained with hematoxylin and eosin (HE).
For plasma/plasmablast cell detection, BM and spleen cells were sorted by magnetic bead depletion of CD3+ cells, and cytospin slides were prepared using a Cytospin 4 Cytocentrifuge (Thermo Scientific, Waltham, MA) at 500 rounds per minute for 5 min. To observe the cellular morphology, May-Grunwald-Giemsa staining was performed. May-Grunwald Stain Solution (Wako co. Ltd, Tokyo, Japan) and Giemsa’s Azur Eosin Methylene Blue Solution (Merck, Darmstadt, Germany) were used according to the manufacturer’s instructions.
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2

Postmortem Analysis of Idiopathic Parkinson's Disease

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We examined eight consecutive autopsied decedents located at the National Hospital Organization Sendai Medical Center. Four of the decedents were diagnosed with IPD, and four of the decedents were used as CNs (Table 2). CNs were defined as follows: clinical symptoms were not observed, and abnormal p‐αSyn, amyloid β or phosphorylated tau aggregates were not observed in brain specimens from autopsied individuals. The ages of the decedents ranged from 62 to 87 years, with an average of 74.8 years. The entire brain tissue was fixed in 20% buffered formalin (Wako, Osaka, Japan) for 5–11 days. Serial coronal sections were dehydrated in a graded ethanol series, cleared in xylene, and embedded in paraffin using an automated tissue processor.
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3

Detailed Neuropathological Examination Protocol

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Brains and spinal cords were examined according to our BBAR protocol [1 (link), 6 (link), 10 (link)]. The brains and spinal cords were fixed in 20% buffered formalin (Wako, Osaka, Japan) for 7–13 days and then dehydrated in a graded alcohol series, cleared in xylene, and embedded in paraffin. Serial sections (6 μm thick) were cut and stained with hematoxylin and eosin and by the Klüver–Barrera method. They were further examined with Gallyas Braak silver staining [7 (link)].
For immunohistochemistry, we used the Ventana Benchmark XT autoimmunostainer (Ventana, Tucson, AZ, USA) according to the manufacture’s protocol [1 (link), 6 (link), 10 (link)]. The BNM sections were immunostained using the following antibodies raised against synthetic peptide corresponding to phosphorylated tau (ptau; AT-8, 1:100, monoclonal; Innogenetics, Ghent, Belgium), phosphorylated α-synuclein (pSyn#64, polyclonal, 1:20,000; Wako, Osaka, Japan), and phosphorylated TDP-43 (pTDP43; pSer409/410, monoclonal, 1:10,000; Cosmo Bio, Tokyo, Japan). The signals from monoclonal and polyclonal antibodies were detected using the automatic system on a Ventana Discovery with the I-View DAB Universal Kit (Roche, Basel, Switzerland) according to the manufacturer’s instructions. Sections were counterstained with hematoxylin.
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4

Brain and Spinal Cord Examination Protocol

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Brains and spinal cords were examined as previously reported 10, 16, 17, 40 . Briefly, the cerebral and cerebellar hemispheres, as well as the brainstem, were dissected in the sagittal plane at the time of autopsy. In each case, one hemisphere and brainstem was preserved at -80℃ for further biochemical and molecular analyses. The following anatomical areas were sampled: the frontal, temporal, and occipital poles parietal lobe including the intraparietal sulcus, anterior amygdala, posterior hippocampus, dentate nucleus, and midbrain. Samples were directly fixed in 4% paraformaldehyde for 48 h and prepared for immunohistochemical and ultrastructural analyses. The other hemisphere was fixed in 20% buffered formalin (WAKO, Osaka, Japan) for 7-13 days and sliced similarly to the contralateral hemisphere. Representative sections were embedded in paraffin. Serial sections (6 μm) were cut and stained with hematoxylin and eosin and Klüver-Barrera. Selected sections were further examined with modified methenamine silver 18 and Gallyas-Braak 19 staining for senile changes, Congo red for amyloid deposition, and elastica Masson trichrome stain for vascular changes.
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5

Cell Viability Assay on Collagen-Coated Surfaces

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Methylene blue staining was used to visualize the attached L929 cells on the collagen-coated polystyrene culture plate and the PDMS 12 h after seeding. The cells were fixed with 10% buffered formalin (FUJIFILM Wako Pure Chemical Corporation) and stained with 1.4% methylene blue solution (Sigma-Aldrich) for 30 min at room temperature. After washing with 10 mM sodium borate buffer (Sigma-Aldrich), stained cells were observed under a light microscope.
The cell viability on collagen-coated polystyrene culture plates and PDMS 12 h after seeding was quantified using a tetrazolium salt-based assay (WST-1; Roche Diagnostics, Tokyo, Japan). For WST-1-based colorimetry, 10% (v/v) WST-1 reagent was added to the culture medium. The culture plate was incubated at 37 °C for 3 h, and then the supernatants were transferred into a 96-well microplate. The amount of formazan produced in the supernatant was measured using an ELISA plate reader at 450 nm.
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6

Extracting Mouse Epididymal Sperm

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A pair of Cauda epididymis from adult mice (11–17 weeks) were placed in 1 ml of D-MEM (Wako, 044-29765)/10% bovine serum albumin (BSA) in a 35 mm petri dish (Corning, 430165) and torn to pieces using two fine forceps for 3 min. After incubation at 32 oC for 20 min, 20 μl of sperm suspension was fixed in 480 μl 10% buffered formalin (Wako, 062-01661) at room temperature for counting.
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7

Cell Colony Formation Assay

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For stably transfected cell lines, 100 cells were cultured in 10‐cm dishes for 14 days. For transiently transfected cells, 1 × 105 cells were cultured in a 10‐cm dish and selected with G418 (1.2 mg/mL) for 14 days. The resulting colonies were fixed with 10% buffered formalin, stained with 0.05% toluidine blue solution (pH 7.0) (Wako, Osaka, Japan) and quantified.
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8

Transcriptome Analysis of Aortic Tissues

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Four human DA tissues were subjected to tissue staining and transcriptome analysis. Each DA tissue was divided into two pieces. One piece was fixed with 10% buffered formalin (FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan) for tissue staining. The other piece of tissue was prepared for microarray analysis as follows. After the adventitia was removed, each DA tissue was divided into two parts: the inner part and the outer part, which mainly contained IT and the tunica media, respectively, as indicated by the yellow dotted lines in Figure 1A. The tissues were immediately frozen in liquid nitrogen and stored at −80 °C until all patient samples were collected. Total RNA preparation and microarray analysis were performed as described previously [10 (link),11 (link)]. Briefly, the frozen tissues were disrupted by a multi-bead shocker instrument (Yasui Kikai, Osaka, Japan). After buffer RLT with β-mercaptoethanol was added to the tissues, they were sonicated to ensure the samples were uniformly homogeneous. Total RNA was isolated using a RNeasy Mini Kit (Qiagen, Venlo, The Netherlands). Microarray experiments were carried out using a SurePrint G3 Human GE 8 × 60 K v2 Microarray (Agilent, Santa Clara, CA, USA) according to the manufacturer’s protocol.
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9

Quantitative Pulmonary Vessel Pathology

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Resected lung tissues were fixed in 10% buffered formalin (Wako) for ≥ 48 h. The samples
were embedded in paraffin and sliced into 3-µm thick sections. Lung and heart tissues were
stained with Elastica van Gieson staining. The pathological quantification of the
pulmonary vessels was based on a previous report.24 (link) We identified all the pulmonary vessels in at least two slides per animal. The
pulmonary vessels were scored by intimal occlusion severity as follows: 0, no neointima
formation; 1, mild neointima formation and luminal narrowing ( <50%); and 2, severe
neointima formation and luminal occlusion ( >50%). The histological findings were
assessed by two investigators (T.J.S and H.S.) in a blinded manner, and final evaluations
were based on their consensus.
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10

Evaluating Cytocompatibility of PDMS Substrates

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Cell appearances of hGFs and THP-1 cells on polystyrene and/or PDMS substrates were observed under a phase contrast microscope. Cell morphometries were performed on microscopic images of THP-1 cells using ImageJ software version 1.53t (National Institutes of Health, Bethesda, MD, USA) to evaluate aspect ratio and circularity.
The cytocompatibility of each PDMS substrate was evaluated via phase microscopy and water-soluble tetrazolium (WST)-1-based assay (Roche Diagnostics, Tokyo, Japan) for quantification of adherent cells in the hGF culture. For WST-1-based colorimetry, a 10% v/v WST-1 reagent was added to the culture medium. The culture plate was incubated at 37 °C for 3 h and then the supernatants were transferred into a 96-well microplate. The amount of formazan produced in the supernatant was measured using an enzyme-linked immunosorbent assay reader at a wavelength of 450 nm.
Methylene blue staining was used to visualize the attached hGFs on the collagen-coated polystyrene culture plate and PDMS, 12 h after seeding. The cells were fixed with 10% buffered formalin (FUJIFILM Wako Pure Chemical Corporation) and stained with 1.4% methylene blue solution for 30 min at room temperature. After washing with 10 mM sodium borate buffer, stained cells were observed under a light microscope.
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