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5 protocols using hif 1α

1

Astrocyte Transfection and KRGE Treatment

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At 70~75% confluency, astrocytes were transfected with small interfering ribonucleic acid (si-RNA) against a negative control (Thermo Fisher Scientific) or SIRT1, SIRT2, SIRT3, SIRT4, SIRT5, nicotinamide phosphoribosyltransferase (Nampt), ERRα, Tom20, Tom22, PHD2 (Santa Cruz Biotechnology), and HIF-1α (Dharmacon, Lafayette, CO, USA) using RNAiMax (Thermo Fisher Scientific). We used 50 nM si-RNAs except for si-PHD2 (10 nM). After approximately 16 h of recovery, the cells were incubated with KRGE (0.5 mg/mL) or water for 24 h in DMEM without FBS.
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2

Neuroblastoma Cell Line: Akt-mTOR Signaling

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The human neuroblastoma cell line SK-N-MC was obtained from Korean Cell Line Bank (Seoul, Korea). The antibodies of p-Akt (Thr308), p-Akt (Ser473), Akt, mTOR, Caveolin-1, Flotillin-2, p-Tau (Ser396), Tau, p-NF-κB p65 (Ser536), NF-κB p65, Lamin A/C, CBP and β-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The antibodies of p-mTOR (Ser2448), p-p70S6K1 (Thr389) and p70S6K1, were acquired from Cell Signaling Technology (Beverly, MA, USA). Aβ, BACE1, HIF-1α and GPR40 antibodies were obtained from Abcam (Cambridge, MA, USA). The C99 antibody was purchased from EMD Millipore (Darmstadt, Germany). Horse radish peroxidase (HRP)-conjugated IgG was obtained from Jackson Immunoresearch (West Groove, PA, USA). PA, BSA, GW9508, ionomycin, PF4708671, LY294002 and rapamycin were purchased from Sigma Chemical Company (St. Louis, MO, USA). The Akt inhibitor, GW1100 and SN50 used here were purchased from Calbiochem (La Jolla, CA, USA). siRNAs for GPR40, GPR120, APP, BACE1, HIF-1α and non-targeting were obtained from Dharmacon (Lafayette, CO, USA).
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3

Silencing Nur77, β-catenin, and HIF-1α

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Small interfering RNA (siRNA) targeting Nur77 (SMARTpool 5′-UCGAGGACUUCCAGGUGUA-3′, 5′-GGACAGAGCAGCUGCCCAA-3′, 5′-GAAGGCCGCUGUGCUGUGU-3′, 5′-CGGCUACACAGGAGAGUUU-3′), β-catenin (5′-AAGUCCUGUAUGAGUGGGAAC-3′), HIF-1α (5′-GGACACAGAUUUAGACUUG-3′), and a non-specific duplex oligo (5′-GGCTACGTCCAGGAGCGCA-3′) were purchased from Dharmacon (Lafayette, CO, USA). Cells were transfected with 20 nmol l−1 siRNA using siLectFect (Bio-Rad, Hercules, CA, USA) following the manufacturer's instructions. Transfected cells were serum starved for 24 h before incubation under hypoxic conditions.
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4

siRNA Knockdown of C4orf47 and HIF-1α

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C4orf47 (ON-TARGETplusTM SMART pool, No.L-033933), HIF-1α (ON-TARGETplusTM SMART pool, No. L-004018), and negative control siRNA (ON-TARGETplus™ Control non-targeting siRNA, No. D-001810) were purchased from Dharmacon (Lafayette, CO). Transfection was carried out at 37°C for 48 h according to the manufacturers protocol; cells (2.0 × 105 cells/well) were seeded in 6-well plates and transfected with 20 nM siRNA under normoxia using Lipofectamine RNAiMAX reagent (Invitrogen; Thermo Fisher Scientific, Inc.).
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5

Targeted gene silencing via siRNAs

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Pre-designed HIF-1α, CASP8AP2 and Non-Targeting Control (NTC) ON-TARGET plus siRNAs in SMARTpool format were obatained from Dharmacon (Horizon Discovery, Waterbeach, UK). miR-210-3p mimics, miR-210-3p inhibitor and negative control (miR-scramble) mimics were purchased from Ambion (Thermo Fisher Scientific, Waltham, MA, USA). All transient transfections were performed with Lipofectamine RNAiMAX (Invitrogen, Waltham, MA, USA) according to the manufacturer’s instructions Following transfections, cells were used in downstream exosome isolations, sarcosphere assays and/or immunoblotting.
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