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4 protocols using ab53255

1

Multidrug Protocol for Cancer Research

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Etravirine (T2551), paclitaxel (T1912), and wortmannin (T6283) were purchased from TargetMol (Boston, MA, USA). Chloroquine (CQ, C6628), Immobilon Crescendo Western HRP substrate (WBLUR0500), Propidium iodide (P4170), Ribonuclease A (RNase A) (R6513), siRNA universal negative control (SIC001) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against AGR2 (ab76473), LC3B (ab48394), and CD31 (ab76533), anti-ATG7 (ab53255) were purchased from Abcam (Life Technologies Corporation, Carlsbad, CA, USA). Antibodies against GAPDH (sc-32233), VEGF (A-20, sc-152), and beta actin (sc-47778) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies against cleaved caspase-3 (Asp175, 9664), ATG7 siRNA (6604S), ULK1 (8054S), and PCNA (D3H8P, 13110) antibodies were purchased from Cell Signaling Technology (Boston, MA, USA). NpFlamma HGC ICG (PNC1501) was purchased from BioActs (Incheon, South Korea).
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2

Dissecting Autophagy Signaling in Glioma

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Glioma and normal tissues were minced, homogenized, and digested in RIPA lysis buffer (with protease and phosphatase inhibitors, Thermo Scientific). Cells were scraped off culture plates on ice and lysed with RIPA (with protease and phosphatase inhibitors, Thermo Scientific). The resulting suspensions were centrifuged at 13,000 rpm for 20 minutes at 4°C, and the protein supernatant was collected. Protein samples were prepared for PAGE gel electrophoresis. Proteins were then transferred to a PVDF membrane (BioRad) for immunoblotting with relevant antibodies. The following antibodies were used in this study: TRIB3 (ab137526, Abcam), P62 (ab91526, Abcam), LC3 (ab51520, Abcam) and ATG5 (#15071, Cell Signaling), ATG7 (ab53255, Abcam) and GAPDH (#5174, Cell Signaling) served as loading controls.
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Western Blotting Technique for Protein Analysis

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RIPA buffer containing 1mmol/L PMSF was used to extract total protein from treated cells and tissues, and a BCA protein assay kit was used to determine the protein concentration. Protein bands were detected via SDS-PAGE and then transferred to a polyvinylidene difluoride membrane. The proteins were closed with sealing fluid and washed with phosphate-buffered saline and Tween three times for 15 minutes each time. The PVDF membrane was incubated with primary antibody at 4°C overnight. After three washes, the membrane was incubated with secondary antibody at room temperature for 1 hour, and actin was used as the control. Finally, the membrane was laid flat on a tray, chromogenic liquid was evenly added with a liquid transfer gun, and the membrane was exposed using a GE chemiluminescence imager (General Electric, USA). The Western blotting grayscale was determined using Image J software.
The primary antibody information was as follows: anti-PCNA (SC-71858, Santa, USA), anti-CDK2 (18048S, CST, USA), anti-CDK4 (12790S, CST, USA), anti-γH2AX (7631S, CST, USA), anti-LC3BI/II (ab51520, Abcam, USA), anti-ATG7 (ab53255, Abcam, USA), anti-p62 (ab56416, Abcam, USA), anti-Beclin1 (ab210498, Abcam, USA), anti-mTOR (2972S, CST, USA), anti-p-mTOR (2971S, CST, USA), anti-Akt (9272S, CST, USA), anti-p-Akt (13038S, CST, USA), and anti-β-actin (3700S, CST, USA).
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4

Protein Extraction and Western Blot

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A protein extraction kit (Beyotime) was used to extract the proteins, and then proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto a polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA, USA). The membrane was blocked with 5% nonfat milk which was dissolved with TBST. After that the membrane was incubated with the primary antibodies against MMP2 (1:1000; ab97779; Abcam, Cambridge, UK), MMP9 (1:1000; ab38898 ab92742; Abcam), CD9 (1:2000; ab92726; Abcam), CD63 (1:2000; ab134045; Abcam), ATG7 (1:1000; ab53255; Abcam) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; 1:5000; ab9485; Abcam) overnight at 4°C. Subsequently, the secondary antibody (1:5000; ab205718; Abcam) was used to incubate the membrane for 1.5 h at room temperature. Protein blot was detected by enhanced chemiluminescence reagents (Millipore).
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