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6 protocols using anti zeb2

1

Comprehensive Protein Analysis in Cell Lysates

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The proteins were extracted from the whole cell lysates using RIPA cell lysis buffer and the protein concentration was determined by the Bradford reagent. In total, 20 μg of the extracted total cellular protein from each sample were separated via SDS-PAGE, and transblotted onto EMD Millipore Immobilon™-P PVDF Transfer Membranes (EMD Millipore Cat No.: IPVH00010, USA). Western blot analyses were conducted with the following antibodies: mouse monoclonal anti-CD109 (Cat. No. 556039, BD Biosciences), anti-fibronectin (Cat. No. 610078, BD Biosciences), anti-Vimentin (D21H3) XP® Rabbit (Cat. No. 5741. Cell signaling); Anti-ZEB2 (Cat. No. sc-271984, Santa Cruz Biotechnology); rabbit polyclonal anti-Snail (Cat. No. ab5351, Abcam), anti-twist (Cat. No. ab505181; Abcam), anti-TGFBR1 (ALK5) (Cat. No. AHO1552, Invitrogen), anti-N Cadherin (Cat. No. ab18203, Abcam), anti-E-Cadherin (Cat. No. ab216783, Abcam), Anti-P-Smad2 (Cat. No. mAb #3108, cell signalling); Anti-P-Smad2/3 (Cat. No. MAB8935, R&D system, and anti- Slug (Cat. No. 9585S Cell signaling), anti-β-actin antibodies (Cat. No. sc-47778, Santa Cruz Biotechnology).
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2

Western Blotting of EMT Markers

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Western blotting was conducted as previously described.19 (link),20 (link) Briefly, the total proteins were extracted from the cells with RIPA lysis buffer, separated in 8–12% SDS-PAGE gels, and transferred onto PVDF (polyvinylidene fluoride) membranes (Millipore, Billerica, MA, USA). After blocking with 5% nonfat milk at room temperature for 1 hour, the membranes were incubated with the relevant primary antibodies followed by an appropriate secondary antibody. The primary antibodies in the current study included anti-UBE2O (1:800, Abcam), anti-E-cadherin, anti-Vimentin, anti-N-cadherin, anti-Snail, anti-Zeb1 and anti-Zeb2 (1:800, Cell Signaling Technology, Danvers, MA, USA). Anti-β-Actin (1:1000, Beyotime, Shanghai, China) was used as a loading control. The blots were visualized using ECL reagents (Pierce, Rockford, IL, USA) and a chemiluminescence imaging system (Bio-Rad, Richmond, CA, USA).
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3

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

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Total proteins were extracted from fresh tissues and cells using RIPA Protein Lysis solution (Pierce, IL, USA) and quantified by the Bradford method. Prepared samples were electrophoresed by sodium dodecyl sulfate polyacrylamide gel electrophoresis and blotted onto a polyvinylidene fluoride membrane (Millipore, MA, USA) using the Tetra Handcast system (Bio-Rad, USA). The membrane was blocked for 1 h at room temperature or overnight at 4 °C in Tris-buffered saline with 0.05% Tween (TBST) containing 5% non-fat milk. Then it was incubated overnight at 4 °C with the appropriate primary antibody, and followed by the secondary antibody for 70 min at room temperature. The protein bands were detected and quantified using the Gene Gnome Syngene Bio Imaging System (Syngene, UK) with an electrochemiluminescence kit (Pierce, IL, USA).
The primary anti-SOX3 antibody was purchased from Abcam (MA, USA), and the anti-β actin antibody was purchased from Santa Cruz Biotechnology Inc. (CA, USA). Other primary antibodies (anti-E-cadherin, anti-CK-18, anti-N-cadherin, anti-vimentin, anti-Snail1, anti-Twist1, anti-Slug, anti-ZEB1, anti- ZEB2, anti-FLAG) were purchased from Cell Signaling Technology (MA, USA). Anti-mouse or anti-rabbit HRP-conjugated secondary antibodies were purchase from Santa Cruz Biotechnology Inc. (CA, USA).
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4

Immunoblotting Antibody Dilutions

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The commercial available antibodies and dilutions used in the immunoblotting analysis were listed below: anti-ZEB1 (1:1000, Cell Signaling, Danvers, MA, USA, #3369), anti-ZEB2 (1:1000, Cell Signaling, #97885), anti-p53 (1:2000, Santa Cruz, Dallas, Texas, USA, sc-126), anti-E-Cadherin (1:500, Santa Cruz, sc-8426), anti-N-Cadherin (1:250, Santa Cruz, Sc-59987), anti-CPT1C (1:500, Santa Cruz, sc-514555), and anti-Actin (1:1000, Santa Cruz, sc-47778).
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5

Western Blot Analysis of EMT Markers

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Briefly, lysis buffer (Cell Signaling Technology, Danvers, MA, USA) was rapidly added to cells or tissues after washing by pre-cooled phosphate buffer saline. After quantifying and boiling, 40 µg of total protein was subject to 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and then transferred nitrocellulose membranes (GE Healthcare, Piscataway, NJ, USA). After blocking by 5% non-fat milk for 2 h, membranes were interacted with primary anti-bodies overnight at 4 °C, including anti-E-cadherin (#3195S; 1:1500 dilution), anti-Vimentin (#5741S; 1:1500 dilution), anti-ZEB2 (#3396S; 1:1500 dilution), and anti-β-actin (#4970S; 1:1500 dilution; all purchased from Cell Signaling Technology). Following, membranes were reacted to HRP-conjugated secondary antibody (#7074S; 1:200 dilution; Cell Signaling Technology). The relative expression of proteins was detected under ChemiDoc MP imaging system (Bio-Rad, Hercules, CA, USA) by Clarity™ Western ECL Substrate Kit (Bio-Rad).
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6

Western Blot Analysis of EMT Regulators

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15μg of protein were separated on NuPAGE 4%-12% precast gels (Thermo Fisher) and transferred to nitrocellulose membranes. Membranes were blocked in 5% non-fat dry milk in TBST and incubated with one of the following primary antibodies overnight at 4°C: anti-ZEB1 (Cell Signaling Technology (CST) #3396, RRID:AB_1904164), anti-ZEB2 (CST #97885), anti-ROCK1 (CST #4035; RRID:AB_2238679), anti-ROCK2 (CST #9029; RRID:AB_11127802), anti-SP1 (CST #9389; RRID:AB_11220235), anti-SUZ12 (CST #3737; RRID:AB_2196850), or anti-BMI1 (CST #6964; RRID:AB_10828713). Anti-beta-actin (CST #3700; RRID:AB_2242334) was used as a loading control. Membranes were washed with TBST and incubated with HRP-conjugated secondary antibodies (Fisher Scientific #NC9611376 and #NC9491974) for 1hr at room temperature. Membranes were washed with TBST and chemiluminescence signal was captured using a LI-COR imaging system.
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