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11 protocols using ab72583

1

Apoptosis and Wnt5a Pathway Evaluation

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PPI (National Institute for the Control of Pharmaceutical and Biological Products, Beijing, China; batch number, 111590-200402), cis-platinum (DDP; Yunnan, China), reverse transcription-polymerase chain reaction (RT-PCR) kit (PrimeScript™ RT reagent kit; Takara Biotechnology Co., Ltd., Dalian, China), primers (synthesized by Takara Biotechnology Co., Ltd.) and PCR kit (SYBR Premix Ex Taq™II: catalog no., DRR820A; Dalian, China) were used in the present study, as well as primary antibodies against Caspase-9 (ab32539), C-jun (ab31419) and Wnt5a (ab72583), which were obtained from Abcam (Cambridge, UK) and used at 1:80 dilution. The secondary antibody, which was the working solution from the AuraStain SP Mouse/Rabbit IHC test kit (P003IH-1) was acquired from Auragene Bioscience Corporation, Inc. (Changsha, China).
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2

Immunohistochemical Mapping of GABA in Spinal Cord

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The distribution of GABA in the SDH was determined by immunohistochemistry. Rats were perfused intracardially with 4% paraformaldehyde in 0.1 M phosphate buffer, and the L4–L5 segments of the spinal cord were removed, postfixed in the same solution for overnight, and cryoprotected with 30% sucrose in PBS for 2 days. Cryostat sections (35µm thickness) were incubated overnight at 4 °C with rabbit anti-GABA (1:1000; a gift from Dr. Yuan Zhu, Department of Medicine, University of Michigan, MI), mouse anti-GFAP antibody (1 : 2000, cata# G3893, Sigma, St. Louis, MO), mouse anti-OX42 antibody (1:1000, cata# CBL1512, Millipore, Billerica, MA), mouse anti-NeuN monoclonal antibody (A60) (1 : 5000, cata# MAB377, Millipore, Billerica, MA), or rabbit anti-Wnt5a (1:1000, cata# ab72583, Abcam, Cambridge, MA) followed by fluorescent IgG (Alexa Fluor 488, 1:1000 or Alexa Fluor 594, Molecular Probes, Eugene, OR, USA) for 2 hours at room temperature. Fluorescence images were captured by a fluorescent microscopy (Fluorescent M Leica/Micro CDMI 6000B)29 (link), 88 (link).
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3

Protein Expression Analysis of Dental Stem Cells

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Total proteins were extracted by RIPA Buffer (Thermo Scientific) with Protease/Phosphatase Inhibitor Cocktail (Cell Signaling Technology, Danvers, MA, USA). Nucleus proteins were extracted with NE-PER® Nuclear and Cytoplasmic Extraction kit (Thermo Scientific) per manufacturer protocols. Cell lysate proteins (12 pg) were separated by 4-12% SDS-PAGE, transferred to nitrocellulose membranes (Bio-Rad, Hercules, CA, USA), and detected with anti-Alx3 (ab64985, 1:500, abcam), anti-CTNNB1 (ab32572, 1:500, abcam), anti-DSPP (sc-73632, 1:200, Santa Cruz), anti-Runx2 (ab76956, 1:400, abcam), anti-DMP1 (sc-6551, 1:200, Santa Cruz), anti-Axin2 (ab32197, 1:400, abcam) anti-VEGF (sc-7269, 1:200, Santa Cruz), anti-pVEGFR2 (2474S, 1:500, CST), anti-Wnt3a (09-162, 1:400, Millipore), anti-Wnt5a (ab72583, 1:400, abcam), anti-Wnt10a (ab106522, 1:400, abcam), anti-Collagen I (ab34710, 1:400, abcam), anti-tubulin (sc-398103, 1:200, Santa Cruz), anti-lamin B (sc-6216, 1:200, Santa Cruz), anti-Gapdh (sc-25778, 1:500, Santa Cruz) primary antibodies. Signals were detected by Odyssey® Imaging System (LI-COR) using IRDye® 800CW Secondary Antibodies (1:10000, LI-COR, Lincoln, NB, USA).
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4

Immunohistochemical Staining of Wnt5a and Ror2

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Immunohistochemical staining has been performed by using rabbit anti-human Wnt5a antibody (1:100, ab72583, Abcam, USA) and rabbit anti-human Ror2 antibody (1:200, HPA021868, Sigma, Germany). The sections were heated in tissue-drying oven for 1 h at 60 °C, routine deparaffinized, and rehydrated. Antigen retrieval was performed in a microwave for 30 min with citrate buffer, and it was cooled to room temperature and washed with phosphate-buffered saline (PBS). Endogenous peroxidase activity was blocked with endogenous peroxidase blockers for 30 min, then the peroxidase was incubated in 5 % normal goat serum for 30 min. After overnight incubation at 4 °C with the primary antibody, sections were washed with PBS and subsequently incubated with a biotin-conjugated secondary antibody for 1 h at room temperature. The reactions became visible after immersion of diaminobenzidine tetrahydrochloride (DAB).
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5

Immunohistochemical Analysis of β-Catenin, Dickkopf-1, WNT16, and WNT5a

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Immunohistochemistry was performed as previously described34 (link). The primary antibodies used in the study included a rabbit monoclonal anti-β-catenin antibody (1:400; #8814; Cell Signaling), a rabbit polyclonal anti-Dickkopf-1 antibody (1:100; sc-25516; Santa Cruz), a mouse monoclonal anti-WNT16 antibody (1:100; sc-271897; Santa Cruz), and a rabbit polyclonal anti-WNT5a antibody (1:100; ab72583; Abcam). The biotinylated goat anti-mouse and goat anti-rabbit IgG were acquired from Boster (Wuhan, China). To obtain the percentage of cells that expressed a given marker protein, photomicrographic images of each section were captured with an Olympus microscope and a digital camera under ×200magnification. The number of specific antigen-positive cells was counted in five random fields. The mean and standard deviation of the percentage of positive cells were calculated for each group and were used for the statistical analysis.
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6

Immunohistochemical Mapping of GABA in Spinal Cord

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The distribution of GABA in the SDH was determined by immunohistochemistry. Rats were perfused intracardially with 4% paraformaldehyde in 0.1 M phosphate buffer, and the L4–L5 segments of the spinal cord were removed, postfixed in the same solution for overnight, and cryoprotected with 30% sucrose in PBS for 2 days. Cryostat sections (35µm thickness) were incubated overnight at 4 °C with rabbit anti-GABA (1:1000; a gift from Dr. Yuan Zhu, Department of Medicine, University of Michigan, MI), mouse anti-GFAP antibody (1 : 2000, cata# G3893, Sigma, St. Louis, MO), mouse anti-OX42 antibody (1:1000, cata# CBL1512, Millipore, Billerica, MA), mouse anti-NeuN monoclonal antibody (A60) (1 : 5000, cata# MAB377, Millipore, Billerica, MA), or rabbit anti-Wnt5a (1:1000, cata# ab72583, Abcam, Cambridge, MA) followed by fluorescent IgG (Alexa Fluor 488, 1:1000 or Alexa Fluor 594, Molecular Probes, Eugene, OR, USA) for 2 hours at room temperature. Fluorescence images were captured by a fluorescent microscopy (Fluorescent M Leica/Micro CDMI 6000B)29 (link), 88 (link).
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7

NRTI Inhibitors Modulate Neuroinflammation

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NRTI inhibitors: 2′, 3′-dideoxycytidine (ddC; Sigma, D5782-250MG; 15 mg/kg), didanosine (ddI; Fisher, 50-555-1; 25 mg/kg), 2′, 3′didehydro-2′, 3′-dideoxythymidine (d4T; Sigma, D1413-50MG; 25 mg/kg) and 3′-azido-3′-deoxythymidine (AZT; Sigma, A2169-250MG; 25 mg/kg) were dissolved in 0.9% saline (1 mg/ml) and injected (i.p.) every other day. These free base forms of NRTIs were dissolved well in saline to preparing the NRTI solution for i.p. injection. Saline was used as the vehicle control.
The antibodies used for 3, 3′-diaminobenzidine (DAB) immunohistochemical staining were rat anti-CD11b (AbD Serotec, MAG74GA, dilution 1:200), rabbit anti-Ib1 (Wako, 019-19741, dilution 1:500), mouse anti-GFAP (Millipore, mab360, dilution 1:1500), rabbit anti-IL1β (Santa Cruz Technology, sc-7884, dilution 1:200), rabbit anti-Wnt5a (Abcam, ab72583, dilution 1:300), and rabbit anti-TNFα (Santa Cruz Technology, sc-8301, dilution 1:200).
The antibodies used for western blotting were rabbit anti-Wnt5a (CST cat.; 2530, 1 g/ml), goat anti-IL-1 (R&D Systems, cat. AF-401-NA, 0.2 g/ml), goat-anti-TNF-α (R&D Systems cat. AF-410-NA, 0.1 g/ml), and rabbit anti-GFAP (Millipore, cat # 04-1062).
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8

Quantifying Protein Expression in Cells

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Western blots were carried out as described previously.22 The following primary antibodies were used: anti‐GAPDH, anti‐PTEN, anti‐WNT5A, and anti‐N‐cadherin (all from Abcam, Cambridge, UK; ab128915, ab32199, ab72583, and ab76011, respectively). IRDye 800CW goat anti‐rabbit IgG and IRDye 680CW goat anti‐mouse IgG (both from LI‐COR Biosciences, Lincoln, NE, USA) were used as secondary antibodies.
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9

Immunohistochemical Analysis of Wnt Signaling

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Paraffin‐embedded tissue was section into 4‐μm‐thick sections, and stained. Briefly, sections were rehydrated and equilibrated in TBS before antigen retrieval, either by heat in low pH buffer, or enzymatically with Proteinase K (20 μg/ml, 37°C/30 min), before primary antibody was applied (omitted for controls) and incubated 1.5 h (RT). Slides were rinsed and secondary antibody, visualized using DAB, counterstained in HTX and mounted. The following antibodies were used to visualize markers of Wnt signaling: Wnt3a (1:300, 09‐162, EMD Millipore Corp. Billerica, MA), Wnt5a/b (1:100, ab72583, Abcam, Cambridge, UK), β‐catenin (1:100, AF1329, R&D Systems, Minneapolis, MN), Disheveled‐associated activator of morphogenesis 1/DAAM1 (1:200, ab71327, Abcam), Inhibitor of β‐catenin and TCF‐4/ICAT (1:50, ab197916, Abcam) and Nemo‐like kinase/NLK (1:100, ab26050, Abcam). For double stainings to visualize cell types, the following antibodies were used in combination with β‐catenin; Prosurfactant Protein C (ProSpC, 1:1000, ab90716, Abcam), pan‐cytokeratin (1:100, ab27988, Abcam) and Vimentin (1:500, ab92547, Abcam), as well as ICAT and NLK. Fluorescent secondary antibodies were used (dilutions and pretreatments were identical when applicable).
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10

Immunohistochemical Analysis of Stem Cell Signaling

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After deparaffinization, the sections were blocked with 5 % BSA for 1 h at RT and incubated with primary antibodies against Bmp-2 (1:100; Abcam; #ab82511), Bmp-4 (1:200; Abcam; #ab39973), Wnt5a (1:150; Abcam; #ab72583), Sox2 (1:100; Abcam; #ab97959), and Notch1 (1:200; Abcam; #ab8925). Secondary antibodies (Abcam; #ab6721) were used at a dilution of 1:200. The sections were developed with an anti-rabbit HRP/DAB detection kit (Abcam; #ab64261). Negative controls were obtained by omitting the primary antibody, and images were acquired with the same exposure.
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