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5 protocols using irdye 800 cw goat anti rabbit igg 926 32211

1

Urine Immunoblot Analysis of MMP-9 and MMP-2

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Urine analysis by immunoblot was performed according to Ferreira and colleagues [21 (link)]. Briefly, concentrated urine samples of each animal were diluted in Tris-buffered saline (TBS) to a final protein concentration of 0.1 µg·µL−1. A volume of 100 µL was slot-blotted onto a nitrocellulose membrane (Hybond® ECL™, Amersham Pharmacia Biotech, Amersham, Buckinghamshire, UK). Nonspecific binding was blocked with 5% (w/v) nonfat dry milk in TBS with Tween 20 (TBST). Each membrane was then incubated with the appropriate primary antibody solution [anti-matrix metalloproteinase (MMP)9 (ab38898) diluted 1:500 and anti-MMP2 (ab37150) diluted 1:200 from Abcam (Cambridge, UK)]. Membranes were then washed, incubated with the secondary antibody diluted 1:10,000 [IRDye® 800 CW Goat anti-rabbit IgG (926-32211) from LI-COR Biosciences (Lincoln, NE, USA)] and washed again. All antibody solutions were diluted in 5% (w/v) nonfat dry milk in TBST and all incubations were performed for 1 h at room temperature with agitation. Detection was performed with fluorescence according to the manufacturers’ instructions (LI-COR Biosciences, Lincoln, NE, USA). Images were acquired using LI-COR Odyssey® Scanner (LI-COR Biosciences, Lincoln, NE, USA) and analyzed using Image Studio™ Lite software (LI-COR Biosciences, Lincoln, NE, USA, v5.2.5). Optical densities (OD) values were expressed in arbitrary units.
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2

Chloroquine and Rapamycin Autophagy Assay

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Chloroquine (C129284) was purchased from Aladdin. Rapamycin (no. S1039) was obtained from Selleck Chemicals.
The antibody against LC3B (no. 2775) was purchased from Cell Signaling Technology. The antibodies against UAF1 (16503-1-AP), ATG7 (10088-2-AP), GAPDH (60004-1-lg), and SQSTM1 (18420-1-AP) were purchased from Proteintech. JEV E (GTX125867) was obtained from GeneTex. IRDye 800CW goat anti-rabbit IgG (926-32211) and IRDye 800CW goat anti-mouse IgG (926-32210) were purchased from LI-COR.
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3

Recombinant Expression of PHF6 and SUV4-20H2

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The PHF6 and SUV4-20H2 genes were amplified with specific primers using the cDNA of 293T as the template. The amplicons were ligated into pCMV-3× HA and pEGFP-C1, respectively, to generate recombinant expression constructs. pcDNA3/Myc-DNMT1 (Addgene plasmid # 36939) and pcDNA3/Myc-DNMT3A (Addgene plasmid # 35521) were kind gifts from Arthur Riggs.
The anti-DNMT3A (sc-20703), anti-RPA194 (sc-28714), anti-UBF (sc-9131 X), and anti-c Myc (sc-40 X) antibodies were purchased from Santa Cruz. The anti-α-tubulin (T6199), anti-HA (H9658), and anti-bromodeoxyuridine (BrdU) (B2531) antibodies were bought from Sigma. The anti-5-methylcytosine (BI-MECY-0100) antibody was purchased from Eurogentec, and the anti-PHF6 (Bethyl-451A) was purchased from Bethyl Laboratories. The anti-H4K20me3 (ab9053), anti-DNMT1 (ab13537), anti-GFP (ab290), and anti-H3 (ab1791) antibodies were bought from Abcam. The secondary antibodies, IRDye800CW goat anti-mouse IgG (926-32210) and IRDye800CW goat anti-rabbit IgG (926-32211) were purchased from LI-COR.
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Quantification and Visualization of Protein Targets

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BCA protein concentration assay (Merk Life Science S.r.l., Milano, Italy) was used for protein quantification. Western blotting was performed as previously described [49 (link),62 (link)]. Primary antibodies used were: Complexin 1/2 (1:1000, cod. 122002, Synaptic System, Goettingen, Germany), Kif5c (1:1000, cod. Ab193352, Abcam, Cambridge, UK), and Rock2 (1:1000, cod. 04-841, Merk Life Science). Antibodies against GAPDH (1:6000, cod. Mab374, Merk Life Science) or α-Tubulin (1:20,000, cod. ab7291, Abcam) were used as internal controls. Luminescence or chemiluminescence were used for signal detection. Secondary antibodies used were anti-mouse and anti-rabbit horseradish peroxidase (HRP)-conjugated (1:2000, Merk Life Science) or fluorophor-conjugated antibodies (1:2000, IRDye 800CW goat anti-rabbit IgG 926-32211 or IRDye 680RD goat anti-mouse IgG 926-68020, LI-COR, Bad Homburg, Germany). Chemiluminescent signals were detected using an enhanced chemiluminescence (ECL) kit (GE Healthcare Life Sciences, Milan, Italy) and visualized with Chemidoc XRS (Bio-Rad Laboratories). Fluorescent signals were detected using an Odyssey infrared imaging system (LI-COR Biosciences) and analyzed using Odyssey version 1.1 (LI-COR Biosciences). Image Studio software (LI-COR Biosciences) was used for quantification.
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5

Ubiquitin and Phospho-Stat3 in GEMM KPC Mice

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Lysates made from quadriceps skeletal muscles collected from GEMM KPC mice and the sex‐matched and age‐matched genotype control mice at early and late tumour stages were subjected to western blotting. The primary antibodies used were ubiquitin (3933) and phosphor‐Stat3 (9145) from Cell Signalling Technology, Danvers, MA, USA, and GAPDH (ab9484) from Abcam, Cambridge, MA, USA. The secondary antibodies used were IRDye 800CW goat anti‐rabbit IgG (926‐32211) and IRDye 680LT goat anti‐mouse IgG2b‐specific (926‐68052) from LICOR Biosciences, Lincoln, NE, USA. Signal was detected using a LI‐COR Odyssey system.
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