The largest database of trusted experimental protocols

3 protocols using grp78 bip

1

Western Blot Analysis of Exosomes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Exosome and cell lysates were separated by SDS-PAGE using precast, 4–15% gradient gels and transferred to PVDF membranes. Membranes were blocked for 2 h using 5% nonfat dry milk in Tris-buffered saline (TBS) with Tween-20 (TBST; 138 mM NaCl, 2.7 mM KCl, 50 mM Tris, pH 8.0, 0.05% Tween-20). Membranes were then incubated overnight in blocking solution containing antibodies obtained from commercial sources (CD9 [clone HI9a, BioLegend]; CD63 [clone MX-49.129.5, Santa Cruz Biotechnology], CD81 [555675, BD Pharmingen], E-cadherin [20874-1-AP, Thermo Fisher]; N-cadherin [MA1-2002, Thermo Fisher]; GRP78/BiP [PA1-014A, Thermo Fisher]; calreticulin [MA5-32131, Thermo Fisher]; ERGIC-3 [clone B5, sc-398778, Santa Cruz Biotechnology]; GM130 [PA1-077, Thermo Fisher]; HSP60 [ab190828, Abcam]; HSP90 [sc-13119; Santa Cruz Biotechnology]; Lamp2 [MA1-205, Thermo Fisher]). The next day, the membranes were washed, exposed to HRP-conjugates of goat secondary antibodies (Jackson Immunoresearch), washed again, incubated with an HRP-activated chemiluminescence detection solution (Amersham), and imaged using a GE Amersham Imager 600. Images were exported as JPEG files and assembled into figures using Adobe Illustrator and Adobe Photoshop.
+ Open protocol
+ Expand
2

Immunofluorescence Analysis of Cellular Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded on glass coverslips placed in 6-well plates and treated for 96 h with Dox. They were then fixed with 3.7% paraformaldehyde for 10 min, permeabilized in 100% ice-cold methanol for 10 min at −20 °C and finally blocked with DPBS supplemented with 3% bovine serum albumin (BSA) for 30 min. After each step, cells were rinsed in DPBS and incubated with primary antibodies overnight at 4 °C, following which the cells were washed in DPBS and incubated with secondary antibodies at RT for 1 h on the next day. Glass coverslips were counterstained with DAPI, mounted on glass slides and examined under a Zeiss confocal fluorescence microscope (Zeiss LSM 700). The primary antibodies used were the following: Calreticulin (D3E6) XP (Cell Signaling Technology (CST), Heidelberg, Germany, 12238; 1:250), Dyskerin (Santa Cruz Biotechnology, Dallas, TX, USA, sc-373956; 1:1000), GRP78/BiP (Thermo Fisher Scientific, Waltham, MA, USA, PA5-11418; 1:500) and LC3 (Abcam, CA, USA, ab51520; 1:3000). The secondary antibodies used were: Cy3-AffiniPure Goat Anti-Rabbit IgG (H + L) (Invitrogen, Van Allen Way Carlsbad, CA, USA, A10520; 1:500) and Alexa Fluor 488 donkey anti mouse IgG (H + L) (Invitrogen, Van Allen Way Carlsbad, CA, USA, A21202; 1:1000).
+ Open protocol
+ Expand
3

Western Blot Analysis of Retinal Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Retinal cellular protein was extracted in Tris-lysis buffer (pH 7.5) with protease inhibitors (Sigma, St. Louis, MO), and the protein concentration was measured with the Lowry method. Equal amounts of protein from each group were separated with sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS–PAGE) and transferred to nitrocellulose membrane. The primary antibodies for HIF1α (ab187524, Abcam antibodies, Cambridge, UK), GRP78/Bip (PA5–19503, ThermoScientific, Waltham, MA), ATF6 α (MA5–16172, ThermoScientific), XBP1 (ab37152, Abcam), CHOP (2895s, Cell Signaling Technologies, Danvers, MA), caspase 12 (ab62484, Abcam), BAX (2772s, CST), VEGF (MA1–16629, tubulin (ThermoScientific), and the respective secondary antibodies were added sequentially, and the protein was detected with an enhanced chemiluminescence reagent (Bio-Rad Laboratories, Inc., Berkeley, CA). Tubulin served as a loading control. Band intensity was measured with ImageJ software (National Institutes of Health [NIH], Bethesda, MD).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!