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10 protocols using lymphoprep reagent

1

Isolation of Testis, Brain, and Blood Leukocytes

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The tunica albuginea of resected testes was opened, and cells were transferred into RPMI medium containing 1 mg/ml Collagenase II (Worthington Biochemicals) and 0.15 mg/ml DNase I (Sigma). Testis-resident leukocytes were obtained through enzymatic digestion at 37°C for 40 min and passage through 70-µm cell strainers (BD Falcon). Brain tissue was macerated and taken up in HBSS containing 0.5% d-glucose (Sigma) and 15 mM Hepes (Life Technologies). The resulting cell suspension was passed through 70-µm cell strainers and subjected to a 70/37/30% Percoll gradient, from which microglia were isolated. Peripheral blood leukocytes were isolated by density centrifugation using Lymphoprep reagent (Stem Cell Technologies) following the manufacturer’s instructions.
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2

Isolation and Culture of Ph+ B-ALL Cells

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Heparinized bone marrow samples were collected from 6 patients with newly diagnosed Ph+ B-ALL (detailed information for these patients are provided in Supplementary Table S2). Mononuclear cells (MNCs) were then separated by density gradient centrifugation using Lymphoprep reagent (Stemcell Technologies). Subsequently, MNCs were cultured in StemSpan basic media (Stemcell Technologies) supplemented with 10 ng/mL human stem cell factor, 10 ng/mL human IL-3, 10 ng/mL human IL-6 (all above cytokines were purchased from R&D Systems), 100 U/mL penicillin, and 100 μg/mL streptomycin (both from BBI Life Sciences). This study was approved by the Institutional Review Board of the Ruijin Hospital affiliated to Shanghai Jiao Tong University School of Medicine. Informed consent for the in vitro drug testing studies was obtained in accordance with the Declaration of Ruijin Hospital affiliated to Shanghai Jiao Tong University School of Medicine.
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3

Plasma and PBMC Isolation from Blood

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Peripheral blood mononuclear cells (PBMC) and plasma were separated from whole blood using Lymphoprep reagent (Stemcell Technologies Inc, Vancouver, British Columbia, Canada). Plasma samples were stored at – 80 °C while PBMC were analyzed immediately after isolation.
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4

Isolation of PBMCs and Neutrophils

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PBMC were obtained from Ficoll separation of whole blood using Lymphoprep reagent (Stemcell Technologies). Neutrophils were subsequently isolated from the granulocyte and red cell pellet formed at the bottom of the Ficoll tube by hypotonic cell lysis in ammonium chloride buffer. Cell viability was assessed by trypan blue dye exclusion. Purified cells were visualised and counted using a haemocytometer before re-suspension in TRIzol reagent (Invitrogen, Paisley, UK). Care was taken to minimize the time between blood-drawing and placing cells in TRIzol reagent to within 3 h.
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5

Nickel-Induced Monocyte Activation

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Peripheral blood mononuclear cells (PBMCs) were isolated from blood collected from healthy adult donors under local ethics approval (09/H0606/71). Samples were diluted and centrifuged in a density gradient using a Lymphoprep™ reagent (STEMCELL Technologies Inc.). The CD14+ cells were separated with a MACS MicroBead (Miltenyi Biotec) magnetic separation system according to the manufacturer’s protocol. Subsequently, the monocytes were cultured in a 1 × 106/ml density in the RPMI medium supplemented with 10% fetal calf serum, penicillin/streptomycin mix and 2 mM L-glutamine, with addition of cytokines: 250 ng/ml GM-CSF, 100 ng/ml IL-4, 10 ng/ml TGF-β1, all obtained from Pepro-Tech. After 5 days of culture, the cells were exposed to a Ni(NO3)2 solution (1 mM), peptides (50 µM) or Ni2+-peptide complexes with the same concentrations of peptides and of the nickel salt. After 48 h the cells were harvested for the flow cytometry analysis.
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6

Isolation and Culture of AML Mononuclear Cells

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Bone marrow (BM) samples were collected from patients with AML (patient details are provided in Supplementary Table S1). Mononuclear cells were separated with Lymphoprep reagent (Stemcell Technologies) using density gradient centrifugation. They were subsequently cultured in StemSpan SFEM medium (Stemcell Technologies) supplemented with 10 ng/mL human stem cell factor, 10 ng/mL human IL3, 10 ng/mL human IL6 (all cytokines were purchased from R&D Systems), 100 U/mL penicillin, and 100 μg/mL streptomycin (both from BBI Life Sciences).
Written informed consents were obtained from all patients in accordance with the Declaration of Helsinki, and all manipulations were approved by the Institutional Review Board of Guangzhou First People's Hospital, School of Medicine, South China University of Technology (Guangzhou, P.R. China).
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7

Gilteritinib and Foretinib Effects on Human Cord Blood Progenitors

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Human cord blood was obtained after full-term delivery with informed consent, under the approval of Institutional Review Board of Guangzhou First People's Hospital. Mononuclear cells were isolated with Lymphoprep reagent (Stemcell Technologies) through density gradient centrifugation and then seeded in MethoCult methylcellulose medium (H4435; Stemcell Technologies) supplemented with various concentrations of gilteritinib or foretinib at a density of 2 × 104 cells/plate. After 10 days, burst-forming unit-erythroid (BFU-E), colony-forming unit-granulocyte, macrophage (CFU-GM), and colony-forming unit–granulocyte, erythrocyte, monocyte/macrophage, megakaryocyte (CFU-GEMM) colonies were counted under the microscope.
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8

Isolation of Primary Human Lymphocytes

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Buffy coats from healthy blood donors were received from the blood center at the Uppsala University Hospital, Sweden. Peripheral blood mononuclear cells (PBMC) were isolated using SepMate tubes-50 (Stem Cell Technologies) by density gradient centrifugation. Briefly, 10 ml Lymphoprep reagent (Stem Cell Technologies) was added to the tubes followed by addition of blood on top of Lymphoprep. The tubes were then centrifuged at 1200×g for 10 min. Next, cell suspension above the Lymphoprep was collected and PBMCs were washed twice with phosphate-buffered saline (PBS, Thermo Fisher Scientific). For optimal lysis of red blood cells, 5 ml ACK lysis buffer (Thermo Fisher Scientific) was added to the cells and incubated in the dark for 10 min at room temperature followed by centrifugation at 500 × g for 5 min. After that, primary monocytes were removed by an EasySep CD14+ selection kit II (Stem Cell Technology) according to the manufacturer’s instructions. Primary human lymphocytes were stored in −150 °C until use.
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9

Isolation and Purification of Human Monocytes

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Peripheral blood mononuclear cells (PBMC) and plasma were isolated from up to 20 ml of venous blood by density gradient centrifugation, using standardized protocols and Lymphoprep reagent from Stemcell (Cambridge, MA, United States). Plasma was then stored at −80°C until use (10 (link)). A minimum of 1.5 million CD14+ monocytes were sorted starting from 20 million PBMC through immunomagnetic separation technique (Miltenyi Biotec, Bergish Gladbach, Germany). Purity of monocyte population was always >95%.
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10

Isolation and Labeling of Primary Human Lymphocytes

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Leukocyte cones were obtained from anonymous healthy blood donors, in accordance with the Human Tissue Act (NHS Blood Transfusion Unit, approval number M153). In order to isolate primary human peripheral blood mononuclear cells (PBMCs), blood products were first diluted in 50 ml PBS and laid carefully on top of 10 ml Lymphoprep reagent (StemCell Technology, Vancouver, Canada). The tubes were then centrifuged at 800 g for 20 min with the brakes off. Next, PBMCs were harvested from the interface above the Lymphoprep and washed twice in 50 ml PBS. In some cases, the cells were incubated in 5 ml ACK lysis buffer (Thermo Fisher Scientific, Massachusetts, USA) at room temperature for 3 min to remove the remaining red blood cells. Primary human monocytes were then depleted using EasySep CD14+ selection kit II (StemCell Technology, Vancouver, Canada) following the manufacturer’s instructions. The resulted primary lymphocytes were then resuspended in 3 ml PBS containing 1.5 μM CellTrace CFSE or CellTrace Violet Cell Proliferation Dye (Thermo Fisher Scientific, Massachusetts, USA), incubated at room temperature for 5 min and washed twice with 10 ml PBS. The ‘assay-ready’ lymphocytes were frozen at up to 100 million cells per vial and stored in liquid nitrogen tanks.
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